Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01580 ATGGAGAAGAAGAGCGAGAATGAGAATTCATCAGGTGGTCGAGAGTTCAATGCAAATGGAAATAGAATGAATGCTGCAGAAGTTGAAGACAAACTTGACCAAGGAAATGTTGAAGCCGCTGAATCTGCATTGAAAGATGGCTTATCTATCACTTCTGAGGAAGCAAGAGTTCTTATCGGGAAGCTAGAGTATCAAAGAGGAAATTATGCAAGTGCTCTTCATGTGTTTGATGGAGTTCATCTGCAAGCTGCCCTTCAGCAATTACAATCGCTAGTTTCTGACAAATCGTTGGTCAAGAAAGCACGCCCTCGCGCTGAATCACCTACCTCAATCCCTAGGCATGCTGCTAGTTTGATGCTTGAATCCATCTACTTGAAAGCAAAAACTCTACGAAAGCAGGGGAAAATATCTGAAGCTACCGCTGAATGCAAAACTGTGCATGAGGGTATTGAGAAGGCCTTTAGTCAGGGTGTATCGGATATTCAATTGGACAACACCTTGCAAGAAGTAGTCAGTGACATTGTAGGACTTCTTCCAGAGCTTAAAAAGCAAGCAGGTAACTATCAAGAGGCATTGTCCGCTTATAGGCGTGCTCTTCAACTTCTGAGGCAATGGAACTTTGATACTGATGGCTGTGCTAGAGTTCAGAAAGGACTTGCCATGCTTTTGCTGTACGGTGGGTTCGAGGCTAGCCCACCCAAGGCGACTGATCAGCACGAGGGGTTTTATGTACCTAAAAACAATATGGAAGAGGCAATTCTGCTTCTAATGCTTGCTGTGAGGAGACTTTGCATTGATAAGTCCAAGTGGGATCCTTCAGTGATGGAGCACTTGACTTTTGCACTTTCTGCATGTGGCCAAACTTCTGTTCTAGCAAAGCAACTTGAAGAGTTAATGCCTGGATTATATCATCGTATCAATCGTTGGAATCTTTTAGCTTTATGTCTCCAGGAAGGAGGACAAAACGAAAGTGCTTTGGATCTACTTAGGAAGTCTTTGCACAAACATGAGAAACCAAATGACATTAAATCATTGTTAGTAGCTGCCAGGATCTGCAGTGAGAAACCTTGTCTTGCTGCTGAGGGAGTGGGGTATGCTCAAAGGGCAATCAATAATGCTAAGGGCATAAACAAGAATTTGAAAGGTGTGGGTCTTAGAATGCTGGGACTTTGTCTTGGAAAGCAAGCTAAGGTTGCTTCCTCGGACTTTCAAAGGTCTAATCTTCAGTCTAAAGCTCTGAAATCATTAGAAGGGGCGATGGAATTTGAGCATAACAATTCTGATCTGATTTTCGAGCTGGGAGTTCACTATGCAGAACACAGAAATTTGACAACTGCGCTTCACTTTGCAAAGCAATACTTTGATGAAACAGGAGGATCTATATTGAAAGGTTGGAGATTGATTGCTCTGATTTTGTCTGCTCAACAACGATTAACGGATGCTGAAGAGATGATAAATCATGCTTTAGATGAGACCGCAATATGGGAGCAAGGGCCACTGCTTAGACTGAAAGCAAAGCTCAAGATTTTCCAATCACAACCCAAGCATGCTATTGAAACTTATCAAGACATCCTTACATTAATTCAAGCTCAAAAGAATTCCTATGGGCCTATGAAAATAAATACACAGGTTCAAGATGATGTGAAGGAAATTGATGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTGTCGTTGGGAGGATGCTGAAGTTTGTTTGCAAAAGGCCAGAGAATTTAAGGAGTACTCAGCAGAAACAGTGCACATTGAAGGTCTTTTGTGTGAAGGACGTAGACAAAAACAAGAAGCTATTTCTGCTATCACGAAAGGGCTCCTGTTTGAACCACGCTATGTTCCAAGCAAGATCCAGATGGGTGTTTTACTACTGAAAATGAATTCAAAGTCAAAATCTTTGCCTTTAGCCAGAAGCTTGCTTTCTGATGCACTTCGACTTGAACCCACTAACCGCATGGCTTGGTTTCACTTGGGAAAAGTTCACAAGTATGATGGCCGAATAGGTGATGCTGCTGACTGCTTCCAGGCAGCTTCCATGCTTGAAGAATCTGACCCTCTTGAAAGTTTCAGCACTTTGCTTTGA 2100 0.4243 MEKKSENENSSGGREFNANGNRMNAAEVEDKLDQGNVEAAESALKDGLSITSEEARVLIGKLEYQRGNYASALHVFDGVHLQAALQQLQSLVSDKSLVKKARPRAESPTSIPRHAASLMLESIYLKAKTLRKQGKISEATAECKTVHEGIEKAFSQGVSDIQLDNTLQEVVSDIVGLLPELKKQAGNYQEALSAYRRALQLLRQWNFDTDGCARVQKGLAMLLLYGGFEASPPKATDQHEGFYVPKNNMEEAILLLMLAVRRLCIDKSKWDPSVMEHLTFALSACGQTSVLAKQLEELMPGLYHRINRWNLLALCLQEGGQNESALDLLRKSLHKHEKPNDIKSLLVAARICSEKPCLAAEGVGYAQRAINNAKGINKNLKGVGLRMLGLCLGKQAKVASSDFQRSNLQSKALKSLEGAMEFEHNNSDLIFELGVHYAEHRNLTTALHFAKQYFDETGGSILKGWRLIALILSAQQRLTDAEEMINHALDETAIWEQGPLLRLKAKLKIFQSQPKHAIETYQDILTLIQAQKNSYGPMKINTQVQDDVKEIDVWHGLANLYASLCRWEDAEVCLQKAREFKEYSAETVHIEGLLCEGRRQKQEAISAITKGLLFEPRYVPSKIQMGVLLLKMNSKSKSLPLARSLLSDALRLEPTNRMAWFHLGKVHKYDGRIGDAADCFQAASMLEESDPLESFSTLL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01580 699 Coils Coil 471 491 - -
Accr10g01580 699 SUPERFAMILY TPR-like 501 687 IPR011990 GO:0005515
Accr10g01580 699 SMART tpr_5 462 495 IPR019734 GO:0005515
Accr10g01580 699 SMART tpr_5 585 618 IPR019734 GO:0005515
Accr10g01580 699 SMART tpr_5 551 584 IPR019734 GO:0005515
Accr10g01580 699 SMART tpr_5 306 339 IPR019734 GO:0005515
Accr10g01580 699 SMART tpr_5 172 205 IPR019734 GO:0005515
Accr10g01580 699 SMART tpr_5 657 690 IPR019734 GO:0005515
Accr10g01580 699 PANTHER PROTEIN NPG1 4 696 IPR043376 -
Accr10g01580 699 MobiDBLite consensus disorder prediction 1 29 - -
Accr10g01580 699 SUPERFAMILY TPR-like 183 490 IPR011990 GO:0005515
Accr10g01580 699 Gene3D Tetratricopeptide repeat domain 396 696 IPR011990 GO:0005515
Accr10g01580 699 Gene3D Tetratricopeptide repeat domain 17 395 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01580 Accr-Chr10 39657964 39661935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01580 14 699 Calmodulin-binding Proteins AT2G43040 61.248 0.0 842