Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01578 ATGAGACCGTGCGGTGCCTGCAAGTGGAGTCGACGCCGATGCGAACCAGATTGTATATTTGCTCCTCATTTCCCCTCCGATGATCCTCAGAAGTTTGCTGTCGTCCACAAGGGGCTTCCAGTTGATCAGAGAGGACGCGCAGTGAGCAGCTTAGTATACGAAGCAGATGTTAGGGTACGAGACCCGGTGAATGGCTGTGTTGGGGAGATATCCTCCCTGAAGAATCAAGTTTCAGAGCTTCAAAAGAAGCTCGCTGGGGCTCAGGCACAGAATGCTGAAAAAGGCAAGGAGCCCTTTGAAACTGCTCAAGAAAAAGAGCCTTCTGTTTTTGCTGCTGCTAGAGAGAGGATAAATGAAGCTGCTGAGAAACGTATTCCGAAGTTTCCATTTGACCTCAACGAGATTACTTCTGATGAAGATTAA 423 0.4846 MRPCGACKWSRRRCEPDCIFAPHFPSDDPQKFAVVHKGLPVDQRGRAVSSLVYEADVRVRDPVNGCVGEISSLKNQVSELQKKLAGAQAQNAEKGKEPFETAQEKEPSVFAAARERINEAAEKRIPKFPFDLNEITSDED 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01578 140 MobiDBLite consensus disorder prediction 87 108 - -
Accr10g01578 140 Pfam Lateral organ boundaries (LOB) domain 3 88 IPR004883 -
Accr10g01578 140 ProSiteProfiles LOB domain profile. 2 91 IPR004883 -
Accr10g01578 140 Coils Coil 70 97 - -
Accr10g01578 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01578 Accr-Chr10 39641517 39642038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01578 3 90 AS2 family AT2G30130 61.000 8.00e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr10g01578 LOB 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01578 - - egr:104434107 127.487