Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01558 ATGGAGAGGGTTTATGAAGGAGGAGGGAATTTTGGGTTTGAGGATGCGGTGGTGATGACCAGAGATCCAAAGCCAAGGCTGAGATGGACGGCTGATCTTCATGATCGATTTGTGGATGCCGTCACCAAGCTTGGTGGCCCCGACAAAGCGACTCCCAAGTCTGTGTTGAGGTTGATGGGCTTGAAAGGCTTGACTTTGTATCATTTGAAGAGTCATTTGCAGAAATATAGACTTGGACAGCAGGCAAGGAAGCAAAACGCTGAAGAACAACACAAAGAGACAAATAATAGAGGTGCATATGTACATTTTAATGATCGTTCTTCGGGGCTTGATACCAATCACAGAGGCAATAACCAAACAGAGGAAATCCCATTAGCAGAGGCACTGAAGCGCGGGATCGAAGTCCAGAAGCAATTGGAAGAGCAGCTTGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTACAAGCCATGCTGGAGAAAGCACAGAAGAGCCTTACCCTTGACATGAATGGACCAAGCAACAACCTAGAAGCAGCAAGAGCTCAATTGACAGATTTCAACTCTGCTTTGTCCAATTTCATGGAGAATATGAACAGAGACAACAAAGAAAACATCATGGACATGAATGATTTCTACAAGAAGGCTCACAGTTCATCGGCTTTTGGAATTTACCAGGAAGCAGACGGAGAAGACCACAAGGATCAAAAGCCCAAGGTTGAAGAAGGTTCAATACAGTTTGACTTAAACATCAAAGGCAGCTATGACTTTGTATCAGCAGGTGCGGCTGAAATGGATTCCCAGGTGCTTTCATACAGAGTGTAA 840 0.4452 MERVYEGGGNFGFEDAVVMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNAEEQHKETNNRGAYVHFNDRSSGLDTNHRGNNQTEEIPLAEALKRGIEVQKQLEEQLEVQKKLQMRIEAQGKYLQAMLEKAQKSLTLDMNGPSNNLEAARAQLTDFNSALSNFMENMNRDNKENIMDMNDFYKKAHSSSAFGIYQEADGEDHKDQKPKVEEGSIQFDLNIKGSYDFVSAGAAEMDSQVLSYRV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01558 279 Coils Coil 77 97 - -
Accr10g01558 279 Pfam Myb-like DNA-binding domain 27 77 IPR001005 -
Accr10g01558 279 Coils Coil 182 202 - -
Accr10g01558 279 Gene3D - 23 81 - -
Accr10g01558 279 SUPERFAMILY Homeodomain-like 24 81 IPR009057 -
Accr10g01558 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 81 IPR017930 -
Accr10g01558 279 FunFam Myb family transcription factor 23 81 - -
Accr10g01558 279 Pfam MYB-CC type transfactor, LHEQLE motif 124 170 IPR025756 -
Accr10g01558 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 79 IPR006447 GO:0003677
Accr10g01558 279 Coils Coil 136 156 - -
Accr10g01558 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 230 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01558 Accr-Chr10 39429937 39432399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01558 5 192 G2-like Transcription Factor Family AT4G13640 49.741 1.63e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Accr10g01558 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01558 - - qsa:O6P43_025081 366.696