LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01549	ATGGCAGCTTGCACAGTGCACACAACAACACAATTTCTCAACACACAATGCCACATCTCATCTTCATCAAAATCACATTTGGGTCATTTTCCTCAGAAACAGCAGCTAGTTATCTTCAGGAGGAGGAGAAGCAGCCAATGTGTGATAACATGTCGTGCAGTAGGAGGTGATCATGATCAGACGGTGGTGATTGGTCTAGCTGCAGATTCAGGCTGTGGAAAGAGCACATTCATGAGGAGACTAACAAGTGTGTTTGGAGGAACAGCAGAACCATCAAAAGGAGGGAATCCAGATTCCAACACTCTAATTAGCGACACCACAACAGTTATTTGCTTAGATGATTATCATTCATTGGACAGAAATGGAAGAAAAGAGAAAGGGGTCACAGCACTTGATCCAAGATCCAATGATTTTGATCTCATGTATGAACATGTAAAGGCACTTAAGGATGGAGTTTCTGTGGAGAAACCTATTTATAATCATGCCACTGGTCTCTTGGATCCTCCTGAGCTCATTAAGCCTCCCAAAATCTTGGTCATTGAAGGTTTGCATCCAATGTTTGATCCTCGGGTGAGAGAACTGTTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTGAAATTCGGTTGGAAAATTCAGAGAGACATGGCAGAGCGAGGGCACAGCCTTGGAAGCATCAAAGCTAGCATTGAAGCTCGGAAACCTGATTTTGAAGCTTATATTGATCCTCAGAAGCAATATGCAGACGCAGTGATAGAAGTGTTGCCAACACAGCTCATTCCAGATGATAATGACGGAAAGATTTTAAGAGTGAGGTTAATACAGAAAGAAGGGGTTAAGCATTTTAGCCCTTCTTACTTGTTTGATGAAGGATCTACCATTTCCTGGATACCATGTGGCAGGAAGCTAACTTGCTCTTATCCTGGCATTAAATTCTCCTATGGACCAGAGACTTACTATGGCCATGAGGTTTCAGTTCTGGAGATGGATGGGCAATTTGACAAACTAGATGAACTGATTTACGTTGAGAGCCATCTCAGCAACTTGTCAACAAAATTCTATGGAGAGGTCACACAACAGATGTTGAAAAATGCTGATTTCCCAGGAAGCAACAATGGGACAGGTCTTTTCCAGACCATAATTGGTTTGAAGATTAGAAATTTATTTGAACAAATAATAGCCAGCAGGGCTAAGACTCCAGTAGGAGCAGCACAAGCCGAGAGAGAACCTGCCATTGTACATATTGAAAAAGGCAGGCTCTGA	1266	0.4242	MAACTVHTTTQFLNTQCHISSSSKSHLGHFPQKQQLVIFRRRRSSQCVITCRAVGGDHDQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPSKGGNPDSNTLISDTTTVICLDDYHSLDRNGRKEKGVTALDPRSNDFDLMYEHVKALKDGVSVEKPIYNHATGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFGWKIQRDMAERGHSLGSIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNDGKILRVRLIQKEGVKHFSPSYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPETYYGHEVSVLEMDGQFDKLDELIYVESHLSNLSTKFYGEVTQQMLKNADFPGSNNGTGLFQTIIGLKIRNLFEQIIASRAKTPVGAAQAEREPAIVHIEKGRL	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01549	421	PANTHER	URIDINE KINASE	52	303	-	-
	Accr10g01549	421	Gene3D	-	58	289	IPR027417	-
	Accr10g01549	421	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	60	332	IPR027417	-
	Accr10g01549	421	Pfam	Phosphoribulokinase / Uridine kinase family	63	261	IPR006083	GO:0005524\|GO:0016301
	Accr10g01549	421	CDD	PRK	63	352	-	-
	Accr10g01549	421	PRINTS	Phosphoribulokinase family signature	68	85	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Accr10g01549	421	PRINTS	Phosphoribulokinase family signature	212	229	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Accr10g01549	421	PRINTS	Phosphoribulokinase family signature	230	253	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Accr10g01549	421	PRINTS	Phosphoribulokinase family signature	177	195	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Accr10g01549	421	FunFam	Phosphoribulokinase	58	288	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01549	Accr-Chr10	39334101	39336498	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01549	57	253	PRT Gene Family	AT1G55810	26.000	2.34e-15	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01549	K00855		-	gmx:100777515	686.411