LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01547	ATGGGTAAGAAACAGCATGATGCCGCCAGAGTCAGCGAGCCAGTAGCCGAGGAATCCCCCGACTGCTCGGCAATCAAAGCAGAGAAGAAGAAAATGAAGAAGAAGAAAGATAAGCAAAACCAAGATAGTGCCAAAAGAAAGCTCGAGGAAGTAGAGGTTCAGGATAGCACAGAACCAAAAACGAAGAAGAATAAGAAGGATAAGAAATCGAAAAAAATAGCGGAGGAAGCCGTAGCCGTCGAGACAAATGACGCCCAGAACGGCGGAGAGGATGAGTCGGTGAGAGATGAGCATGTGGTGGTTACTGGAAAGAATATTGAGGATGAGAAGTATGCGCCCACAACGACATTTTCCGCATCGGGGCTTCCAAAGGAAGTCTTGGAGTGCTGCAAAAGTTTTGAAAAGCCATCCCCTATTCAGTCCCGAGCGTGGCCTTTCTTATTGAATGGTCGTGATTTAATTGGCATTGCGGCTACTGGGTCAGGAAAAACATTAGCTTTTGGAATACCAGCAATGATGCATGTTTTGGGCAAGCGCAAGGGTAAAGCATCGAAGGGTCGGAATCCTCTCTGCCTTGTGCTCTCTCCCACTAGGGAGTTGGCTCAACAGATTTCAGATGTTATGTGTGATGCTGGGACGTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCGTTAAAATCTGGAATTGACATTGTCATTGGAACTCCTGGTCGTATAAAGGATCTGATTGAAATGGGTGTTCTTTCTTTGAAAGAGGTTTCATTTGTGGTGCTTGATGAAGCTGATCGAATGCTTGATATGGGATTTGAACAAATAGTTCGCTCCATACTGGGTCAGACTTGCTCTGTTCGTCAGATGGTTATGTTCAGTGCTACATGGCCTCTAGCAGTCCATAACTTAGCTCAAGAGTTTATGGATCCTAACCCTGTAAAAGTCGTAATAGGATCAGAAGACTTAGCTGCCAATCATGATGTTATGCAGATAGTTGAGGTCTTGGATGATCGTTCACGAGATAAACGCCTGGTTGCTTTGCTAGAAAAGTACCACAAATCGCAGAGGAATAGAGTACTGGTTTTTGTTTTGTACAAATTGGAAGCCTCGCGAGTTGAAAAGACGCTTCATCAAGGGGGTTGGAAGGTTGTCTCGATACATGGGGACAAGTCGCAATATGAACGTACAAAGGCACTATCATTATTCAAGAATGGAAGTTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCTGATGTTGAAGTTGTGATCAACTACAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTAGGACAGGACGAGCTGGGAAGAAAGGAGTTTCCCATACGTTTTTCACTCAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAGAGAAGCAAATCAAATTGTGCCTGATGATCTCCTGAAGTTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTTAAGGAGATTTCTGCTAATGCTCCGAAGTCGAAGAAGATAACTTTTGACGATTCTGACGAAGATTAA	1602	0.4401	MGKKQHDAARVSEPVAEESPDCSAIKAEKKKMKKKKDKQNQDSAKRKLEEVEVQDSTEPKTKKNKKDKKSKKIAEEAVAVETNDAQNGGEDESVRDEHVVVTGKNIEDEKYAPTTTFSASGLPKEVLECCKSFEKPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAMMHVLGKRKGKASKGRNPLCLVLSPTRELAQQISDVMCDAGTSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMGVLSLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLAVHNLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVFVLYKLEASRVEKTLHQGGWKVVSIHGDKSQYERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLREANQIVPDDLLKFGTHVKKKESKLYGAHFKEISANAPKSKKITFDDSDED	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01547	533	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	59	493	-	-
	Accr10g01547	533	CDD	DEADc	133	322	-	-
	Accr10g01547	533	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	346	497	IPR001650	-
	Accr10g01547	533	MobiDBLite	consensus disorder prediction	1	93	-	-
	Accr10g01547	533	SMART	helicmild6	377	458	IPR001650	-
	Accr10g01547	533	FunFam	ATP-dependent RNA helicase RhlB	325	501	-	-
	Accr10g01547	533	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	144	321	IPR014001	-
	Accr10g01547	533	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	471	IPR027417	-
	Accr10g01547	533	Gene3D	-	78	325	IPR027417	-
	Accr10g01547	533	Coils	Coil	22	54	-	-
	Accr10g01547	533	Pfam	Helicase conserved C-terminal domain	349	458	IPR001650	-
	Accr10g01547	533	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	267	275	IPR000629	-
	Accr10g01547	533	Pfam	DEAD/DEAH box helicase	138	307	IPR011545	GO:0003676\|GO:0005524
	Accr10g01547	533	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	115	141	IPR014014	GO:0003724
	Accr10g01547	533	SMART	ultradead3	132	338	IPR014001	-
	Accr10g01547	533	MobiDBLite	consensus disorder prediction	35	78	-	-
	Accr10g01547	533	CDD	SF2_C_DEAD	335	467	-	-
	Accr10g01547	533	Gene3D	-	326	500	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01547	Accr-Chr10	39266336	39272157	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01547	113	487	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.830	6.14e-56	191

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01547	K14811		-	gmx:100806057	816.224