Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr10g01543 | ATGGATCACGGAAGGCAACCCGAGGACTCGTTTTCGTACTCTAATCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATCCCGATTATTATGGTAATAGTTGCCAGGATGAGAGCAGAGACAGCCAAGGCGGGGCGATCGCAAATCACAGCAATGGGGGTATGCGTGAGGTAACTTTTCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAATGCCCATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAATATACAAGAGGGGGTATAAAGATATCTCATCTAGTCCTTCCCAAAATCGTGTTAATGCTCAACTTCTTAAAAGTAACATAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGTACCGAGGAGTAATACGTGTTCTGGAGACTACTACATCTGAGTGGCCTAATGATGTTAATCCTCAGAAACCTGTATACTACCGTGATGCAGAATTCAGACAGCAATATGGACCTAATAGAACTGTCTATGAGCCCACTTCGTTTGATCTTGGAGATGGGGTCACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTATCAGATATCAAAATTGAGGAATTTTACTTAAAAGATACCTTGGATTTGGGATCCTTGACTGCAATGATGGCTTCTGATAAGAGGGGTGTGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCGTGTCAGCTTCTAATTCACGTCATCAATTTAGTCTCAAAGTATCTGATGTTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCAGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTAAAGAGAAATGTGACAAATATGAGATCATTGAAAGAAGCCTACCTACGAGGCAAAAGGTAAAGAAAGACTCTTTGATTGAGAAGAAGGAAATGGAAAGAATTGGAGAAGTCTGGGTAAATATTGTAAGAGACATACCAGAGCATCATAAGTTTATTGAAGGTTTCCATCGAAAGCAACTTGCTGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTCACAATGAAAGTGAGTAGATCACTTAAATTCAAGAAGAGTGTAGCCATTCGCACCCGAAAACTAGCTAAAGATGTTTTGCTGTTCTGGAAACGATCAGATAAGGAGATGGCAGCATTGAGGAAAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAAGCGCGAACAGGAGCTTAGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTCATACAGCAAACTGAGCTATACAGTCACTTTATGCAGGACAAGTCGAACATACTGTCCTCTGATGTTTCACCTACCGTAGATGAAAACGCAGATGATCAACATGCAGAACTTGGCTCTTCAGATGCTGGGCCTTGCAAGGAGGAAGATCCTGAAGAAGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAAAAGCTGTCTCTAAGCAGAGAAAGTTGACGGGTGCTTTTGATAGTGAATGCTTGAGACTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATCTGCAAACCCCCTCAACCATGCCTGTGGTATCAACAGTTCGGACACCAGATATGTTTAGAGGCTGTCTTAAAGAACATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTAAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATTGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTGTTGCACCTAAATCAGTATTGAACAATTGGAATGAAGAACTCGAGCGCTTCTGTCCTGAAATGAAAGCTCTTCCTTACTGGGGTAAGGTTCATGAGCGGACAGTACTTAGGAAAAGTATTAAGCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATCCTCATCACAAACTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTATGAAATGGCAGTACATGGTATTAGATGAAGCTCAGGCAATTAAGAGTTCGAACAGTATAAGATGGAAGACGCTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAGAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATCAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTCTGAATGAACATCAACTTAACAGATTGCATTCTGTTCTAAAGCCTTTCATGCTGCGACGATTTAAAAAAGATGTATTATCCGAACTGACTGGGAAAATAGAGGTTACAGTGTACTGCAAGTTGAGTTCTCAGCAAGAAGCTCTCTATCAAGCAACCAAGAATAAAATATTTCTTGCTGGGTTGTTTGATAGTACTCGTGGGCAGCTCAACGATGAAAGAATGCTGAATTTAATGGATATTGTTACGCAACTAAGAAAGATTTGCAACCATCCAGAGTCGATTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCGAATTCCCTTCTGCTTCCTCCATTTGGGGAGTTGGAGGATGTATACCATTGTGGGGGTCACAATCCAATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATTCGAGGTTCTAAATTGCTCAGTTCAACAATTGCTCGAGGTGTTAGAAGAGAATTTTTTCAAAGGCATCTTAATATTTATAGCCCGGAGAATGTTTTTCAATCTACTTTCTCTGAAGGGAATAAATCAAATGCGTCATTTATCAAAAGTGGAACTTTTGGTTTTGCCCGTTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAACAGAAATCTATCAACGAAGTTGTGGACTTGATAGCGGAGACTATAGATAATGATCCTGAAAGCTGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTAACCCGAATGTTATTGGTGCCAACAAAATCTGAGGCTAAGATTTTTCAAAAAAGATTTGCTACTGGCCCTAGCCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGAGTATATCAAATGCAAGACTTATTCACTCAGCATATTCATATATCCCTCGGACTAGAGCTCCACCAATTATGGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGTATAACCCTTGGGTTATGAGGTTGCTTGTGGGATTTGCTCGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTTGGAACTACCAGCTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCGTCTCCCCCTGTGCAAAATTTAGACCTAGCGAAATTGCTCACTGGCTCTGGGAAGCTTCAAACGCTTGACATATTATTACAACGCTTGCGGGCTGGAAACCATCGTGTTCTCTTGTTTGCTCAGTTGACTAAGATGATGGATATTCTTGAGGACTACATGAACTATAGAAAATATAAATATTTTAGACTTGATGGGTCGACAGATGCTCCGGATCGCAGTGATTTGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCACCTTGACGGCTGCTGACACGGTAATCTTTTATGAGAACGATTGGAATCCCTCATGGGATCAGCAGGCAATGGACAGAGCTCACCGGTTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTAAAGAGACAATTGAAGAGAAGATTCTTCTGAGAGCCAGTCAAAAAAGCACTGTACAGAACCTCGTCATGACTAGTAATTCTAATGGTGATGATACTTATACTCATGATGATGTTCTATCTTTGCTTCTGGATGATGCGCAACTGGAGCAGAAATTCAAGGGAATTCCTCCTCAGGTAAAGGATAAGCAGAAGAGGAAGCAAACTGTGAAGGGCATACGGGTAAATGAAGAAGGTGATGCGTATCTCGAAGATCTCACTAACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCATTAATAAAAAGAGAAATGCTGTGTCTAACAAGCACACGCCATCAAGGGCAAGGAATTTTCAAAATACTGATCCCGCGGTCCAGAAACCCAAGAGACTAAAGAAGGCAAAGAAAGTTGGGAATGACAAGTTTGACCAATTAACTTTGGAGAAATGA | 4470 | 0.4145 | MDHGRQPEDSFSYSNLFNLESLMNFQLPQQDDDPDYYGNSCQDESRDSQGGAIANHSNGGMREVTFLKKRKWSQNSDDEDKGNFCGMPMTEERYRSMLGEHIQIYKRGYKDISSSPSQNRVNAQLLKSNIGLKARKLVNEYRGVIRVLETTTSEWPNDVNPQKPVYYRDAEFRQQYGPNRTVYEPTSFDLGDGVTYKIPPTYDKLAAMLNLPSLSDIKIEEFYLKDTLDLGSLTAMMASDKRGVTRNRAGMGETLPQYDSLQARLKAVSASNSRHQFSLKVSDVGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVKEKCDKYEIIERSLPTRQKVKKDSLIEKKEMERIGEVWVNIVRDIPEHHKFIEGFHRKQLADAKRFSENCQREVTMKVSRSLKFKKSVAIRTRKLAKDVLLFWKRSDKEMAALRKKEEKEAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQDKSNILSSDVSPTVDENADDQHAELGSSDAGPCKEEDPEEVELKKEALKAAQKAVSKQRKLTGAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVVSTVRTPDMFRGCLKEHQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAIAFLAHLAEEKNIWGPFLIVAPKSVLNNWNEELERFCPEMKALPYWGKVHERTVLRKSIKPKDLYRREAKFHILITNYQLLVSDEKYFRRMKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNQWFSKGIENHAEHGGTLNEHQLNRLHSVLKPFMLRRFKKDVLSELTGKIEVTVYCKLSSQQEALYQATKNKIFLAGLFDSTRGQLNDERMLNLMDIVTQLRKICNHPESIERSEGTTFYNFAEIPNSLLLPPFGELEDVYHCGGHNPISYKMPKLVHQEIIRGSKLLSSTIARGVRREFFQRHLNIYSPENVFQSTFSEGNKSNASFIKSGTFGFARLMDLSPQEVMFSATGSFMEQVLFSMVRWEQKSINEVVDLIAETIDNDPESCYLERGKVRAVTRMLLVPTKSEAKIFQKRFATGPSHAPFEALVVPYQDRSISNARLIHSAYSYIPRTRAPPIMAHCSDRSFSYKTLEELYNPWVMRLLVGFARTSEFNGPRKPDGPPHHLIQEIDLELPAAQPALQLTYKILGSSPPVQNLDLAKLLTGSGKLQTLDILLQRLRAGNHRVLLFAQLTKMMDILEDYMNYRKYKYFRLDGSTDAPDRSDLVRDFQQRNDVFVFLLSTRAGGLGITLTAADTVIFYENDWNPSWDQQAMDRAHRLGQTKDVTVYRLICKETIEEKILLRASQKSTVQNLVMTSNSNGDDTYTHDDVLSLLLDDAQLEQKFKGIPPQVKDKQKRKQTVKGIRVNEEGDAYLEDLTNSGAQGPDNDISLDPEGSKPINKKRNAVSNKHTPSRARNFQNTDPAVQKPKRLKKAKKVGNDKFDQLTLEK | 1489 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr10g01543 | 1489 | Gene3D | - | 561 | 837 | IPR038718 | - | |
Accr10g01543 | 1489 | ProSiteProfiles | DBINO domain profile. | 353 | 477 | IPR020838 | GO:0003677 | |
Accr10g01543 | 1489 | Pfam | SNF2-related domain | 603 | 889 | IPR000330 | GO:0005524|GO:0140658 | |
Accr10g01543 | 1489 | SMART | helicmild6 | 1237 | 1320 | IPR001650 | - | |
Accr10g01543 | 1489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 569 | 815 | IPR027417 | - | |
Accr10g01543 | 1489 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 599 | 770 | IPR014001 | - | |
Accr10g01543 | 1489 | PANTHER | HELICASE SRCAP-RELATED | 162 | 519 | - | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 1450 | 1464 | - | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 28 | 60 | - | - | |
Accr10g01543 | 1489 | Pfam | Helicase conserved C-terminal domain | 1212 | 1320 | IPR001650 | - | |
Accr10g01543 | 1489 | CDD | SF2_C_SNF | 1206 | 1331 | - | - | |
Accr10g01543 | 1489 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 817 | 1378 | IPR027417 | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 1385 | 1489 | - | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 487 | 509 | - | - | |
Accr10g01543 | 1489 | SMART | ultradead3 | 583 | 781 | IPR014001 | - | |
Accr10g01543 | 1489 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1211 | 1372 | IPR001650 | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 28 | 55 | - | - | |
Accr10g01543 | 1489 | Coils | Coil | 424 | 463 | - | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 479 | 509 | - | - | |
Accr10g01543 | 1489 | FunFam | Putative DNA helicase INO80 | 559 | 837 | - | - | |
Accr10g01543 | 1489 | MobiDBLite | consensus disorder prediction | 1387 | 1412 | - | - | |
Accr10g01543 | 1489 | Pfam | DNA-binding domain | 348 | 476 | IPR020838 | GO:0003677 | |
Accr10g01543 | 1489 | Gene3D | - | 1178 | 1416 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr10g01543 | Accr-Chr10 | 39228873 | 39240261 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr10g01543 | 607 | 886 | RAD5 or RAD16-like Gene Family | AT5G22750 | 28.363 | 8.95e-21 | 97.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Accr10g01543 | SNF2_N | 4.2e-66 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr10g01543 | K11665 | - | gmx:100780615 | 2138.61 |