Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01543 ATGGATCACGGAAGGCAACCCGAGGACTCGTTTTCGTACTCTAATCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATCCCGATTATTATGGTAATAGTTGCCAGGATGAGAGCAGAGACAGCCAAGGCGGGGCGATCGCAAATCACAGCAATGGGGGTATGCGTGAGGTAACTTTTCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAATGCCCATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCAAATATACAAGAGGGGGTATAAAGATATCTCATCTAGTCCTTCCCAAAATCGTGTTAATGCTCAACTTCTTAAAAGTAACATAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGTACCGAGGAGTAATACGTGTTCTGGAGACTACTACATCTGAGTGGCCTAATGATGTTAATCCTCAGAAACCTGTATACTACCGTGATGCAGAATTCAGACAGCAATATGGACCTAATAGAACTGTCTATGAGCCCACTTCGTTTGATCTTGGAGATGGGGTCACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTATCAGATATCAAAATTGAGGAATTTTACTTAAAAGATACCTTGGATTTGGGATCCTTGACTGCAATGATGGCTTCTGATAAGAGGGGTGTGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCGTGTCAGCTTCTAATTCACGTCATCAATTTAGTCTCAAAGTATCTGATGTTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTGTCAGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTAAAGAGAAATGTGACAAATATGAGATCATTGAAAGAAGCCTACCTACGAGGCAAAAGGTAAAGAAAGACTCTTTGATTGAGAAGAAGGAAATGGAAAGAATTGGAGAAGTCTGGGTAAATATTGTAAGAGACATACCAGAGCATCATAAGTTTATTGAAGGTTTCCATCGAAAGCAACTTGCTGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTCACAATGAAAGTGAGTAGATCACTTAAATTCAAGAAGAGTGTAGCCATTCGCACCCGAAAACTAGCTAAAGATGTTTTGCTGTTCTGGAAACGATCAGATAAGGAGATGGCAGCATTGAGGAAAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAAGCGCGAACAGGAGCTTAGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTCATACAGCAAACTGAGCTATACAGTCACTTTATGCAGGACAAGTCGAACATACTGTCCTCTGATGTTTCACCTACCGTAGATGAAAACGCAGATGATCAACATGCAGAACTTGGCTCTTCAGATGCTGGGCCTTGCAAGGAGGAAGATCCTGAAGAAGTTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAAAAGCTGTCTCTAAGCAGAGAAAGTTGACGGGTGCTTTTGATAGTGAATGCTTGAGACTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATCTGCAAACCCCCTCAACCATGCCTGTGGTATCAACAGTTCGGACACCAGATATGTTTAGAGGCTGTCTTAAAGAACATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTAAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATTGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTGTTGCACCTAAATCAGTATTGAACAATTGGAATGAAGAACTCGAGCGCTTCTGTCCTGAAATGAAAGCTCTTCCTTACTGGGGTAAGGTTCATGAGCGGACAGTACTTAGGAAAAGTATTAAGCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATCCTCATCACAAACTACCAGCTACTAGTATCTGATGAGAAGTATTTTCGGCGTATGAAATGGCAGTACATGGTATTAGATGAAGCTCAGGCAATTAAGAGTTCGAACAGTATAAGATGGAAGACGCTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAGAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATCAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTCTGAATGAACATCAACTTAACAGATTGCATTCTGTTCTAAAGCCTTTCATGCTGCGACGATTTAAAAAAGATGTATTATCCGAACTGACTGGGAAAATAGAGGTTACAGTGTACTGCAAGTTGAGTTCTCAGCAAGAAGCTCTCTATCAAGCAACCAAGAATAAAATATTTCTTGCTGGGTTGTTTGATAGTACTCGTGGGCAGCTCAACGATGAAAGAATGCTGAATTTAATGGATATTGTTACGCAACTAAGAAAGATTTGCAACCATCCAGAGTCGATTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCGAATTCCCTTCTGCTTCCTCCATTTGGGGAGTTGGAGGATGTATACCATTGTGGGGGTCACAATCCAATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATTCGAGGTTCTAAATTGCTCAGTTCAACAATTGCTCGAGGTGTTAGAAGAGAATTTTTTCAAAGGCATCTTAATATTTATAGCCCGGAGAATGTTTTTCAATCTACTTTCTCTGAAGGGAATAAATCAAATGCGTCATTTATCAAAAGTGGAACTTTTGGTTTTGCCCGTTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAACAGAAATCTATCAACGAAGTTGTGGACTTGATAGCGGAGACTATAGATAATGATCCTGAAAGCTGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTAACCCGAATGTTATTGGTGCCAACAAAATCTGAGGCTAAGATTTTTCAAAAAAGATTTGCTACTGGCCCTAGCCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGAGTATATCAAATGCAAGACTTATTCACTCAGCATATTCATATATCCCTCGGACTAGAGCTCCACCAATTATGGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGTATAACCCTTGGGTTATGAGGTTGCTTGTGGGATTTGCTCGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTTGGAACTACCAGCTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCGTCTCCCCCTGTGCAAAATTTAGACCTAGCGAAATTGCTCACTGGCTCTGGGAAGCTTCAAACGCTTGACATATTATTACAACGCTTGCGGGCTGGAAACCATCGTGTTCTCTTGTTTGCTCAGTTGACTAAGATGATGGATATTCTTGAGGACTACATGAACTATAGAAAATATAAATATTTTAGACTTGATGGGTCGACAGATGCTCCGGATCGCAGTGATTTGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCACCTTGACGGCTGCTGACACGGTAATCTTTTATGAGAACGATTGGAATCCCTCATGGGATCAGCAGGCAATGGACAGAGCTCACCGGTTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTAAAGAGACAATTGAAGAGAAGATTCTTCTGAGAGCCAGTCAAAAAAGCACTGTACAGAACCTCGTCATGACTAGTAATTCTAATGGTGATGATACTTATACTCATGATGATGTTCTATCTTTGCTTCTGGATGATGCGCAACTGGAGCAGAAATTCAAGGGAATTCCTCCTCAGGTAAAGGATAAGCAGAAGAGGAAGCAAACTGTGAAGGGCATACGGGTAAATGAAGAAGGTGATGCGTATCTCGAAGATCTCACTAACTCTGGAGCACAGGGCCCAGATAATGATATTTCTCTTGACCCAGAGGGATCAAAGCCCATTAATAAAAAGAGAAATGCTGTGTCTAACAAGCACACGCCATCAAGGGCAAGGAATTTTCAAAATACTGATCCCGCGGTCCAGAAACCCAAGAGACTAAAGAAGGCAAAGAAAGTTGGGAATGACAAGTTTGACCAATTAACTTTGGAGAAATGA 4470 0.4145 MDHGRQPEDSFSYSNLFNLESLMNFQLPQQDDDPDYYGNSCQDESRDSQGGAIANHSNGGMREVTFLKKRKWSQNSDDEDKGNFCGMPMTEERYRSMLGEHIQIYKRGYKDISSSPSQNRVNAQLLKSNIGLKARKLVNEYRGVIRVLETTTSEWPNDVNPQKPVYYRDAEFRQQYGPNRTVYEPTSFDLGDGVTYKIPPTYDKLAAMLNLPSLSDIKIEEFYLKDTLDLGSLTAMMASDKRGVTRNRAGMGETLPQYDSLQARLKAVSASNSRHQFSLKVSDVGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVKEKCDKYEIIERSLPTRQKVKKDSLIEKKEMERIGEVWVNIVRDIPEHHKFIEGFHRKQLADAKRFSENCQREVTMKVSRSLKFKKSVAIRTRKLAKDVLLFWKRSDKEMAALRKKEEKEAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMQDKSNILSSDVSPTVDENADDQHAELGSSDAGPCKEEDPEEVELKKEALKAAQKAVSKQRKLTGAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVVSTVRTPDMFRGCLKEHQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAIAFLAHLAEEKNIWGPFLIVAPKSVLNNWNEELERFCPEMKALPYWGKVHERTVLRKSIKPKDLYRREAKFHILITNYQLLVSDEKYFRRMKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNQWFSKGIENHAEHGGTLNEHQLNRLHSVLKPFMLRRFKKDVLSELTGKIEVTVYCKLSSQQEALYQATKNKIFLAGLFDSTRGQLNDERMLNLMDIVTQLRKICNHPESIERSEGTTFYNFAEIPNSLLLPPFGELEDVYHCGGHNPISYKMPKLVHQEIIRGSKLLSSTIARGVRREFFQRHLNIYSPENVFQSTFSEGNKSNASFIKSGTFGFARLMDLSPQEVMFSATGSFMEQVLFSMVRWEQKSINEVVDLIAETIDNDPESCYLERGKVRAVTRMLLVPTKSEAKIFQKRFATGPSHAPFEALVVPYQDRSISNARLIHSAYSYIPRTRAPPIMAHCSDRSFSYKTLEELYNPWVMRLLVGFARTSEFNGPRKPDGPPHHLIQEIDLELPAAQPALQLTYKILGSSPPVQNLDLAKLLTGSGKLQTLDILLQRLRAGNHRVLLFAQLTKMMDILEDYMNYRKYKYFRLDGSTDAPDRSDLVRDFQQRNDVFVFLLSTRAGGLGITLTAADTVIFYENDWNPSWDQQAMDRAHRLGQTKDVTVYRLICKETIEEKILLRASQKSTVQNLVMTSNSNGDDTYTHDDVLSLLLDDAQLEQKFKGIPPQVKDKQKRKQTVKGIRVNEEGDAYLEDLTNSGAQGPDNDISLDPEGSKPINKKRNAVSNKHTPSRARNFQNTDPAVQKPKRLKKAKKVGNDKFDQLTLEK 1489
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01543 1489 Gene3D - 561 837 IPR038718 -
Accr10g01543 1489 ProSiteProfiles DBINO domain profile. 353 477 IPR020838 GO:0003677
Accr10g01543 1489 Pfam SNF2-related domain 603 889 IPR000330 GO:0005524|GO:0140658
Accr10g01543 1489 SMART helicmild6 1237 1320 IPR001650 -
Accr10g01543 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 815 IPR027417 -
Accr10g01543 1489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 599 770 IPR014001 -
Accr10g01543 1489 PANTHER HELICASE SRCAP-RELATED 162 519 - -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 1450 1464 - -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 28 60 - -
Accr10g01543 1489 Pfam Helicase conserved C-terminal domain 1212 1320 IPR001650 -
Accr10g01543 1489 CDD SF2_C_SNF 1206 1331 - -
Accr10g01543 1489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 817 1378 IPR027417 -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 1385 1489 - -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 487 509 - -
Accr10g01543 1489 SMART ultradead3 583 781 IPR014001 -
Accr10g01543 1489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1211 1372 IPR001650 -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 28 55 - -
Accr10g01543 1489 Coils Coil 424 463 - -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 479 509 - -
Accr10g01543 1489 FunFam Putative DNA helicase INO80 559 837 - -
Accr10g01543 1489 MobiDBLite consensus disorder prediction 1387 1412 - -
Accr10g01543 1489 Pfam DNA-binding domain 348 476 IPR020838 GO:0003677
Accr10g01543 1489 Gene3D - 1178 1416 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr10g01543 Accr-Chr10 39228873 39240261 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01543 607 886 RAD5 or RAD16-like Gene Family AT5G22750 28.363 8.95e-21 97.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr10g01543 SNF2_N 4.2e-66 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01543 K11665 - gmx:100780615 2138.61