Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01520 ATGGTGGAAGGAAGAGTTTGTTTGCCCAAGGAAGCTAGAAAAGTATTAGAATCTTTGAAGCGTAAAAGGCTTCATCGAGCAACATCTTCAACTGCCAACAAAACAAGTGTTGCTAATATGATGACAAGAAGTGGAGGAGATGCTTTAAGGGCTTCTTCATCATGTGGTATGAGATTGCATGGTAATGCAGAAGCCTTTTCCAAGCGGAAGGTGGATAAGTTTGATATGAGTGATCTAGAATGGACTGAAAAAATTCCCGAGTGTCCTGTGTACTCCCCAACAAAGGAGGAATTTGAGGACCCTTTGGTGTATTTGCAAAAGATAATTCCTGTGGCTTCAAGATATGGTATATGCAAGATTATTTCTCCTTTGAGTGCTTCCGTTCCTGCTGGAGTTGTGTTAATGAAGGAGAAAGCAGGATTTAAGTTTGCGACTAGAGTACAGCCACTTCGCCTTGCTGAGTGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTTCGCGATTTTGAAAAAATGGCGAACAAGGTTTTTGCACGTAGATATTGCAGTGCCGGATGTCTTCCTGCCTCATTTTTGGAAAAAGAGTTTTGGCACGAAATTAGCTGTGGAAAGACGGAAACTGTAGAATATGGATGTGATGTAGATGGTAGTGCCTTTTCCTCTTCTCCCAATGATCAACTTGGGAGCAGCAAATGGAATTTGAAGAAGCTTTCTCGGCTGCCCAAATCCATTCTGCGGCTCTTGGAAACAGTAATTCCGGGAGTAACAGAACCCATGCTTTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTTGAGGATCACTATTTGTACAGTATTAATTATCATCATTGTGGGGCACCAAAAACTTGGTACGGAATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTAAGAGAACATGTGTATACTAATGATATTCTGTCAAGTGAAGGGGAAGATGGAGCCTTTGATGTTCTTCTGGGGAAAACAACTTTGTTTCCTCCAAATATTTTGTTGGAACATGAAGTGCCGGTCTACAAAGCTGTTCAAAAACCGGGAGAGTTTATTGTAACCTTTCCTAGAGCGTACCATGCTGGTTTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAATTTTGCCATTGGTGATTGGATTCCATTAGGGGCCATTGCCAGCAGGCGATATGCACATCTAAACAGGGTTCCGCTGCTACCTCTTGAAGAACTTTTATGCAAAGAAGCAATGCTCCTCTATACAAGTTTAGAACTAGAAGATTCAGATTTTCCTTCTGCAGACTCTATGTTTCATAATGGCATCAAGATCTCTTTTACTAATTTGATGCGCTTCCAGCATTGTGCTCGCTGGTTCTTAATTAAATCAGGGGCGTGCACAAATGTTTCTTCACACTCCCATGGCTCAATTCTCTGTAGTCTCTGCAAATGTGACTGCTATGTAGCATATGTTGACTGTGACTGTCACATGCATCCAGTGTGTCTTCGCCATGATATCGAATCTCTTGACTTCACCTGTGGGAGCAAACACACTCTTTTCTTGAGGGAGGATATTGAAGATATGGAAGCTGCGGCCAAGAGGTTTGAGCAGGAAGACGGTATATTGGATGAGATAATTAAGCAGATCAAGGCTGACAATAACATGTATTCATATCCCTTGTCAAATATGTTTCAGAGAGCTGAGGCCGATGGATATACCCCTTATGGTGAGATAAAATTTGATCCTGCTGTTGAATCTTCTCACTCAGGCTCAGATCAGTTAATGAATATTCAAGAGTGTGCTATTCAAAGTCAATGGGCTTCGAGGCATTGCTTAGGATCAGAATATCACAAATCCAAAGTGTCCGATGTTTCCATCGTTTCTGCTGCTTCTGCTCTTTGCTCTCTTTCAGACCCTCGTGAGAGTTATTCTTCAACTACTAAAAACGATGAGGGGCGTACAAACTCGGGCATTGTTAATTCTGAAGAGCTTTGTGAAGGAGTGTCCAACATTGTATGTGAATCTTTAGCTACACGGGGTCACGACAGCTCGATTAAGGCTCAGGGTGGTGATCTTTATGGATTAGAGATGAAATCGATGGTGCATGTTGACAGTGATGATTCTGATTCAGAGATATTTTGGGTAAAGCGGCCTTCTTCGTTGAAGGCAGAGAGGAGAAATGGGGACGATGGCATGGGTCCCAAACATTCTGACCACCAGGGACTAAAACGATTGAAGAAAAACTGTGATGAGGGAAGAAGTAGGCAACTAATAGGGTACAACAGCAAAAGCAGTGAATCAAGTTGCAACAAGTGGAGGCAGCCAGCAAATCACAAAATCGATGGCGAAAGCTGTACGAGAGAAAGATATGCGAAGGTTAATAATGGCATTCCAATTCCCATAAGGTACAAGAAACTGGGAAACGAGGACTTAAGTGGACAAGGAGATCACCACAAGAGTAACTGGCTGCAACAGAGCATAATGGAACCATCGTCCCCCACAGAGGTTGGGATTGGAGCAAAGCGGCTTAAAGTGCGAGGCCCTTCATTCCTGAGCTTGTAG 2580 0.426 MVEGRVCLPKEARKVLESLKRKRLHRATSSTANKTSVANMMTRSGGDALRASSSCGMRLHGNAEAFSKRKVDKFDMSDLEWTEKIPECPVYSPTKEEFEDPLVYLQKIIPVASRYGICKIISPLSASVPAGVVLMKEKAGFKFATRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPASFLEKEFWHEISCGKTETVEYGCDVDGSAFSSSPNDQLGSSKWNLKKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGIPGHAALEFERVVREHVYTNDILSSEGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAIGDWIPLGAIASRRYAHLNRVPLLPLEELLCKEAMLLYTSLELEDSDFPSADSMFHNGIKISFTNLMRFQHCARWFLIKSGACTNVSSHSHGSILCSLCKCDCYVAYVDCDCHMHPVCLRHDIESLDFTCGSKHTLFLREDIEDMEAAAKRFEQEDGILDEIIKQIKADNNMYSYPLSNMFQRAEADGYTPYGEIKFDPAVESSHSGSDQLMNIQECAIQSQWASRHCLGSEYHKSKVSDVSIVSAASALCSLSDPRESYSSTTKNDEGRTNSGIVNSEELCEGVSNIVCESLATRGHDSSIKAQGGDLYGLEMKSMVHVDSDDSDSEIFWVKRPSSLKAERRNGDDGMGPKHSDHQGLKRLKKNCDEGRSRQLIGYNSKSSESSCNKWRQPANHKIDGESCTRERYAKVNNGIPIPIRYKKLGNEDLSGQGDHHKSNWLQQSIMEPSSPTEVGIGAKRLKVRGPSFLSL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01520 859 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Accr10g01520 859 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Accr10g01520 859 Coils Coil 524 544 - -
Accr10g01520 859 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Accr10g01520 859 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Accr10g01520 859 Gene3D Cupin 81 410 - -
Accr10g01520 859 MobiDBLite consensus disorder prediction 644 664 - -
Accr10g01520 859 Pfam jmjN domain 89 121 IPR003349 -
Accr10g01520 859 FunFam Lysine-specific demethylase isoform A 83 432 - -
Accr10g01520 859 SMART cupin_9 235 405 IPR003347 -
Accr10g01520 859 SMART JmjN_1 87 128 IPR003349 -
Accr10g01520 859 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Accr10g01520 859 PANTHER LYSINE-SPECIFIC DEMETHYLASE 80 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01520 Accr-Chr10 38954127 38959614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01520 85 555 JUMONJI Transcription Factor Family AT2G34880 32.537 3.83e-65 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr10g01520 JmjC 1.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01520 - - gmx:100798611 1220.68