Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01508 ATGGATGATTCCAAGGAAGGAGATCCTCAGAGAAAAAAGCAGCAGCAAAAAGTTTCATTGTTAAAGCTCTTCTCTTTCGCTGACTTTTATGATTATCTTCTCATGGCTGTTGGATCTATTGGCGCTCTTGTTCATGGGGCTTCAGTTCCTGTTTTCTTCATCTTTTTCGGAAAGTTGATCAACATCATTGGCTTGGCTTATCTTTTCCCTAAAGAAGCTTCTCACAAAGTTGCTCAGTATTCATTGGATTTCGTGTACCTGAGTGTAGCAATACTATTTTCTTCTTGGACAGAGGTGGCATGTTGGATGCATACTGGAGAAAGGCAAGCGGCGAAGATGAGAATGGCGTATTTAAGGTCAATGCTGAGTCAAGATATTAGTCTTTTTGACACTGAAGCTTCCACCGGAGAGGTCATTTCTGCTATTACCAGTGACATTATTGTTGTCCAAGATGCTTTATCTGAGAAGGTAGGGAATTTCATCCACTACATTAGCAGATTCATATCAGGATTCATTATTGGATTCGTGAGAGTGTGGCAGATTAGTTTAGTGACACTCTCCATTGTCCCCTTAATCGCCCTCGCTGGAGGTCTCTACGCTTATGTCACTGTTGGCCTAATCTCCAAAGTTCGAAAATCCTACGTCAGAGCTGGTGAAATCGCTGAAGAAGTGATAGGCAATGTTAGAACAGTACAGGCATTTGCAGGAGAAGAAAGAGCAGTAAGATCATACAAAATGGCCCTAATGAAAACTTACAAGAATGGTAGAAAAGCAGGATTAGCGAAGGGTTTAGGACTTGGCTCCATGCATTGTGTTCTTTTTCTTTCATGGTCCCTGCTTGTTTGGTTCACAAGCGTTGTTGTTCACAAGGATATCGCCAATGGTGGAGAGTCCTTCACTACCATGCTCAACGTTGTCATCGCCGGCCTGTCACTTGGACAGGCAGCACCAGATATCACTGCATTTGTACGAGCAAAGGCAGCTGCTTATCCCATTTTTCAGATGATAGAGAGGGACACAGTGAGCAAAAGCAGCTCAAAAACTGGTTACAAATTAAACAAAGTAGAGGGTCACATTCAATTCAAAGGCGTTTGCTTCAGTTACCCATCTCGCCCTGAAGTAGTCATCTTCAACAACCTTAATATTGACATTCCTTCAGGCAAAGTTGTGGCCCTTGTTGGGGAAAGTGGTTCTGGAAAGAGCACTGTTATATCACTGATTGAACGCTTCTACGAACCATTTTCTGGGCAGATCCTATTGGATGGGAATAACATCAAGGAACTTGATCTTAAATGGCTAAGGCGACAAATTGGGTTGGTTAATCAAGAACCTGCCCTTTTTGCTACAAGCATCAGGGAGAATATACTGTATGGAAAAGATGATGCCACTCTTGAAGAACTTCAACGAGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAGAGAGGGGTACAACTATCAGGAGGACAAAAGCAAAGGATTGCAATATCTCGTGCTTTAGTGAAGAATCCATCAATCCTTTTATTGGATGAAGCAACCAGTGCCCTGGATGCAGAGTCAGAGAAGAGTGTACAGGAGGCTCTTGATCGTGTCATGGTGGGTCGAACAACTGTGGTAGTAGCACACAGACTTTCTACAATCAGAAACGCAGATGTGATTGCCGTTGTTCAAGGAGGCAAGATCGTTGAAACTGGCAGCCATGATGAGCTCATCGCCAATCCAATTAGTGCATTTGCATCTCTTGTTCAATTCCAAGAGGCAGTTTCTTTGCAAACACACCCTTCAGTAGCTCCTAGCTTAGGACAGCTTTCAAGCGTAAGGAACTCAAGAGAATTATCCCGTACAACGACAAGCTTAGGTGGTAGTTTTCGATCGGATAAAGAATCTATTGGTTGCGTTGATGCTGATGAAGTGGATAGTGGCAAGACAAGGCGTGTTTCCGCTAGAAGATTATATTCCATGATAGGACCTGATTGGTACTATGGGGTTATAGGGACTTTCTGTGCATTTATTGCTGGAGCCCAGATGCCTCTTTTTGCTCTAGGAATATCTCATGCTCTGGTTTCATATTACATGGACTGGGAAACTACCTGTCGTGAGGTCAAGAAAATTGCTTTCCTCTTTTGTGGGGGAGCAGTTGTAACTGTCATTGTCCATGCCATTGAACACCTTTGTTTTGGAATCATGGGTGAGAGACTTACTCTTCGTGTCCGAGAAGCTTTGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTCGATGATACAGAGAACACAAGTTCTATGCTTTCATCACGTCTAGAGACTGATGCAACTTTGTTGCGAACTATAGTTGTTGATCGGTCTGCAATTCTCTTACAGAATGTTGGTCTGGTTGCTGCTTCATTTATTATTGCCTTCTTGTTGAACTGGAGAATAACCCTTGTTGTCATTGCCACTTATCCTTTGGTCATTAGTGGTCACATTAGTGAGAAACTTTTCTTTCAAGGATACGGTGGCAACTTGAGCAAAGCATATCTAAAGGCCAACATGCTGGCTGGAGAGGCTGTGAGTAACATACGCACTGTTGCTGCATTTTGTTCTGAAGATAAAGTCCTTGAACTTTATGCCAGTGAGCTTGTTGATCCTTCCAAGCGTTCGTTAAAACGGGGTCAAATTGCAGGCATATTCTATGGCATTTCCCAGTTCTTCATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGTTCTGTACTGATGGAAAAGGAGCTTGCCAGCTTTAAATCAATCATGAAGTCGTTTATGGTTTTGATAGTAGCAGCACTGGCCATGGGGGAGACTCTGGCTCTGGCTCCAGACCTCTTGAAGGGGAATCAAATGGTTGCATCAGTTTTTCATCTGATGGATAGAAAGTCAGGAGTAATGAGTGATACTGGAGAAGATCTAAAGACAGTAGAGGGAACTATTGAGCTTAAAAATGTCAATTTCAGCTACCCTTCAAGGCCAGATGTGACCATTTTTAAGGATTTTAATCTTAAAGTGCCCTCAGGCAGTAGTCATGCCTTAGTGGGCCAAAGTGGTTCTGGTAAAAGTTCTGTTGTCTCCCTTATTCTCAGGTTTTATGATCCAACTTCTGGGAAGGTGATGATTGACGGGAAGGACATAAGGAGAGTGAATCTGAAATCACTGAGGAAACACATTGGCCTGGTGCAACAAGAACCAGCTCTATTTGCAACATCAATATTTGAGAACATTCTATATGGAAAGGAAGGAGCCTCAGAATCAGAAGTAATTGCAGCAGCTCAACTGGCAAACGCTCACAGCTTCATAAGTGGTCTTCCTGAGGGCTACTCGACCAAAGTGGGCGAGCGAGGAGTTCAGCTATCGGGTGGCCAGAGACAAAGGATAGCCATAGCCAGAGCTGTTTTAAAGAACCCAGAAATATTGCTTCTTGATGAAGCCACAAGTGCACTTGATGTTGAATCAGAGCGTGTGGTTCAGCAAGCACTGGACAGGTTGATGCAGAACAGAACAACAGTGATGGTGGCACATAGACTGTCCACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGGATGATAGTGGAACAAGGGTCTCATCCAATTCTTATAGAGAACAAAAATGGAGCATACTTTAAATTAGTCAGCCTTCAACAGCAACAGAATCAACAATAA 3717 0.4286 MDDSKEGDPQRKKQQQKVSLLKLFSFADFYDYLLMAVGSIGALVHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAQYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVISAITSDIIVVQDALSEKVGNFIHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAYVTVGLISKVRKSYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKMALMKTYKNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSVVVHKDIANGGESFTTMLNVVIAGLSLGQAAPDITAFVRAKAAAYPIFQMIERDTVSKSSSKTGYKLNKVEGHIQFKGVCFSYPSRPEVVIFNNLNIDIPSGKVVALVGESGSGKSTVISLIERFYEPFSGQILLDGNNIKELDLKWLRRQIGLVNQEPALFATSIRENILYGKDDATLEELQRAVKLSDAQSFINNLPDRLETQVGERGVQLSGGQKQRIAISRALVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGSHDELIANPISAFASLVQFQEAVSLQTHPSVAPSLGQLSSVRNSRELSRTTTSLGGSFRSDKESIGCVDADEVDSGKTRRVSARRLYSMIGPDWYYGVIGTFCAFIAGAQMPLFALGISHALVSYYMDWETTCREVKKIAFLFCGGAVVTVIVHAIEHLCFGIMGERLTLRVREALFSAILKNEIGWFDDTENTSSMLSSRLETDATLLRTIVVDRSAILLQNVGLVAASFIIAFLLNWRITLVVIATYPLVISGHISEKLFFQGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEDKVLELYASELVDPSKRSLKRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKSFMVLIVAALAMGETLALAPDLLKGNQMVASVFHLMDRKSGVMSDTGEDLKTVEGTIELKNVNFSYPSRPDVTIFKDFNLKVPSGSSHALVGQSGSGKSSVVSLILRFYDPTSGKVMIDGKDIRRVNLKSLRKHIGLVQQEPALFATSIFENILYGKEGASESEVIAAAQLANAHSFISGLPEGYSTKVGERGVQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGMIVEQGSHPILIENKNGAYFKLVSLQQQQNQQ 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01508 1238 PANTHER ABC TRANSPORTER B FAMILY 4 600 IPR039421 -
Accr10g01508 1238 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524|GO:0016887
Accr10g01508 1238 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 332 - -
Accr10g01508 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 595 IPR027417 -
Accr10g01508 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1232 IPR027417 -
Accr10g01508 1238 FunFam ABC transporter B family member 4 984 1237 - -
Accr10g01508 1238 Pfam ABC transporter 1013 1161 IPR003439 GO:0005524
Accr10g01508 1238 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Accr10g01508 1238 CDD ABC_MTABC3_MDL1_MDL2 994 1229 - -
Accr10g01508 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Accr10g01508 1238 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Accr10g01508 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr10g01508 1238 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 961 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr10g01508 1238 SUPERFAMILY ABC transporter transmembrane region 23 329 IPR036640 GO:0005524|GO:0016020
Accr10g01508 1238 Gene3D - 349 598 IPR027417 -
Accr10g01508 1238 Pfam ABC transporter transmembrane region 39 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr10g01508 1238 Pfam ABC transporter transmembrane region 676 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr10g01508 1238 Pfam ABC transporter 378 526 IPR003439 GO:0005524
Accr10g01508 1238 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 994 1230 IPR003439 GO:0005524
Accr10g01508 1238 FunFam ABC transporter B family member 4 349 604 - -
Accr10g01508 1238 SUPERFAMILY ABC transporter transmembrane region 661 975 IPR036640 GO:0005524|GO:0016020
Accr10g01508 1238 Gene3D - 984 1238 IPR027417 -
Accr10g01508 1238 Gene3D ABC transporter type 1, transmembrane domain 22 963 IPR036640 GO:0005524|GO:0016020
Accr10g01508 1238 SMART AAA_5 1021 1213 IPR003593 GO:0016887
Accr10g01508 1238 SMART AAA_5 386 572 IPR003593 GO:0016887
Accr10g01508 1238 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01508 Accr-Chr10 38836875 38844699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01508 11 1238 Calmodulin-binding Proteins AT2G36910 49.161 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01508 K05658 - gmx:100819045 2085.84