Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01502 ATGGCTTCTCTTGGGAATCCCAGAAGCTGGGTTCCATACATGAACAATAAAGACTGTTCTCAAGGATTCTGCAGTCTCTACTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTACCTGAGGACAATTCAAGCCCTAATTTTTCACCTCTGGTTATAGCAGTCATTGGAATCGTTGCCAGTGCTCTGCTTCTTGTGAGTTACTATACCATAATCTCCAAGTACTGTGGCAACCCAGAATCTTCAGATACACAGAACCATAACGACCTTTCAAATGAAGTTGATCACAATCCTTCCCTTCAGGAGCCATGGCAGGCGCCACCAAGTGGTCTAGACGAGGCTCTGATAAAGTCCATCACAGTGTGTAAGTACAAAAAAGAAGATGGGTTGATCTCTGTAGCAGATTGCTCTGTTTGTCTCAGTGAGTTCAAAGACGATGACACTATCAGGCTCTTGCCTAAGTGCAGCCATGCTTTTCACATCCCTTGTATTGACACGTGGCTCAAATCTCACTCCTCTTGCCCTCTCTGTCGTGCTAGCATTTTCACCTTCAACGCTTCGGCTCTTTTAGTTTCTGATTCAACGACGGAGAATTCAAGTTTCCAGGAAAATCAACCTGGGAATGAGAACAATGAAGCAGTGGTTGAAGAAGAAAGTGAAGAAACCAGACAACATGGTACAGCTCCGAAGCCTACATTGCGTGCAATGAGTGATTTGGGGAATTTGCAGGGAAGGCATAGTGTGATTGAGATAAAAGATGAAGGGTTCGTTGAGCCATTTAGAAGGTCAGTTTCTATGGACCATTCATTTCAAAGAGGTAACGGAGTTGAAGAAGAAGAAGAAGGAGAAGGAAGCTCTGTGAATGAAGCAGGTCCATCAAAGAGATGTCGAGGAGGAGAAAGCAGCAAATGTAACAGCAGAAGAAGTGCATTGCAGTGTGTATTGAGTCCGATTGTAATGAGGAGATCGTTTTCAAGTGGAAGATTCTCTATCAGCAGAGGAAGAAGGCAGGGGATAATCCCAATATGA 1044 0.4425 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEDNSSPNFSPLVIAVIGIVASALLLVSYYTIISKYCGNPESSDTQNHNDLSNEVDHNPSLQEPWQAPPSGLDEALIKSITVCKYKKEDGLISVADCSVCLSEFKDDDTIRLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIFTFNASALLVSDSTTENSSFQENQPGNENNEAVVEEESEETRQHGTAPKPTLRAMSDLGNLQGRHSVIEIKDEGFVEPFRRSVSMDHSFQRGNGVEEEEEGEGSSVNEAGPSKRCRGGESSKCNSRRSALQCVLSPIVMRRSFSSGRFSISRGRRQGIIPI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01502 347 CDD RING-H2_EL5-like 140 183 - -
Accr10g01502 347 MobiDBLite consensus disorder prediction 272 309 - -
Accr10g01502 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 190 IPR013083 -
Accr10g01502 347 FunFam RING-H2 finger protein ATL54 116 189 - -
Accr10g01502 347 PANTHER RING-H2 FINGER PROTEIN ATL16 41 314 IPR044600 GO:0016567|GO:0016740
Accr10g01502 347 SMART ring_2 141 182 IPR001841 -
Accr10g01502 347 MobiDBLite consensus disorder prediction 201 240 - -
Accr10g01502 347 Pfam Ring finger domain 140 183 IPR001841 -
Accr10g01502 347 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Accr10g01502 347 MobiDBLite consensus disorder prediction 201 217 - -
Accr10g01502 347 SUPERFAMILY RING/U-box 140 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01502 Accr-Chr10 38785152 38786195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01502 1 236 C3H Transcription Factor Family AT3G03550 46.360 1.65e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01502 - - gmx:100792267 450.284