Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01495 ATGAATCTTTGGACCGACGATAACTCCTCCGTCATGGATGCTTTCATAGGTTCCGATCTGTCTTCTCTCTGGCCTCCTCAGCAATCCTCAGCTTCTACGACTACCACCACTGGTACTGAACCCTCCAAATCTTTCTCCCAAAACCAGCTTTCAGTTTGCATCTTCAATCAGGAAACTCTCCAGCAACGTCTCCAGGCGCTGATTGAAATGGCCAGCGAGAGCTGGACCTATGCTATCTTTTGGCAATCTTCTTGTGATTACTCGGGAGCCTCCGTATTAGGTTGGGGGGATGGATACTACAAAGGCGAGGAGTGTAAAGGAAAGGGGAAGGCCAAAATGAGGGTGTCTTCCGCGGCGGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTTAATTCCCTAATCTCCGGGTCATCCTCCGCCCCGGATGACGCCGTAGACGAAGAAGTAACGGACACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGCCAGGCGTTCCTCAATTCGAGCCCGGTTTGGGTCGCCGGTTCCGACCGGTTGGCAGCTTCAACATGCGAGAGGGCAAGGCAGGGTCAGCTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAGTGGTGTGGTCGAACTTGGCTCCGCGGAGCTGATATTTCAAAACTCTGATCTGATGAATAAGGTCCTCAGGGATTTGTTCAATTTCAATAGCGCCGAAGCGAGTTCTATATGGCCGTCAAATATTTCAACTGCGGCTGATCAGGGTGAGAACGACCCTTCTTCACTCTGGCTCAACGATCCTTCTGCAATTGAGATTAGGGATTCTGTGACTGCTGTTGCGCCCCATTCAGTGCCCAGTTCTACCATCAGTCATAGCAATAATCCGAAGCCGATGCAGTTAGATACAAGAGGTTCCACTTCTTTGGCTGAGACCCCAACTTCCGTTCATGTCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGATGAGCCAGGGTTTCTTTTCACGGGAATTGAACTTTTCGGACTATGGATTGAACGGAAACGGTGTGAAAAACGGTAATTCGCATTCCTTGAAGCCGGAATCGAGTGAGATTTTGAATTTCGGGGAGAGCAAGAGAAACGCTTATAATGGAAATGGGAATATCCTTTCAGGTCAATCTCAATTCAATGGCGAGGAGAAGAAGAGGAGGTCGCCTACGTCTAGGAGCAGCAATGACGATGGCATCCTTTCTTTCACTTCAGGCGTGGTTTTGCCTCCTTCAAATACGAAGACTGGCGGCGGCGGCGATTCTGATCCTTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGATAGTAAACTGGTAGAACCAGAGAAAAAACCTCGGAAGAGGGGACGAAAACCCGCAAATGGCAGGGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAACCAACGGTTCTATGCGCTTCGTGCCGTTGTTCCAAATGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATATCTTACATCTCTGAGCTCAAGTCGAAGCTTCAGACAATGGAATCAGACAAGAACGAATTGCAGAACCAATTGGATGCTGTGAAGAAGGAACTCGAGATAGCCCACGAAGATTCAGCGCTACCTCCACCGGAGAAAGAACCAAAGCCGTCCAACCATCAAGCCAGCAAGATTACTGATTTGGACATCGACGTGAAGATTATAGGTTGGGATGCGATGATTCGGATTCAATGCAGCAGGAAGAATCACCCAGCAGCAAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGATGTGAATCACGCGAGTGTGTCGGTGGTGAATGATTTGATGATCCAACAAGCAACAGTGAGGATGGGAAGTCAATTCTACACGCTGGAGCAACTCCGTTTAGCACTTTCGGCCAAATTTGACGATGTCCGATAG 1998 0.4965 MNLWTDDNSSVMDAFIGSDLSSLWPPQQSSASTTTTTGTEPSKSFSQNQLSVCIFNQETLQQRLQALIEMASESWTYAIFWQSSCDYSGASVLGWGDGYYKGEECKGKGKAKMRVSSAAEQEHRKKVLRELNSLISGSSSAPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSDRLAASTCERARQGQLFGLQTLVCIPSASGVVELGSAELIFQNSDLMNKVLRDLFNFNSAEASSIWPSNISTAADQGENDPSSLWLNDPSAIEIRDSVTAVAPHSVPSSTISHSNNPKPMQLDTRGSTSLAETPTSVHVPNAHHSHQQQRQQQRHSMSQGFFSRELNFSDYGLNGNGVKNGNSHSLKPESSEILNFGESKRNAYNGNGNILSGQSQFNGEEKKRRSPTSRSSNDDGILSFTSGVVLPPSNTKTGGGGDSDPSDLEASVIKEVDSKLVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQTMESDKNELQNQLDAVKKELEIAHEDSALPPPEKEPKPSNHQASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVVNDLMIQQATVRMGSQFYTLEQLRLALSAKFDDVR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01495 665 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 237 IPR025610 -
Accr10g01495 665 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Accr10g01495 665 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 485 552 IPR036638 GO:0046983
Accr10g01495 665 MobiDBLite consensus disorder prediction 451 492 - -
Accr10g01495 665 SMART finulus 488 537 IPR011598 GO:0046983
Accr10g01495 665 Gene3D - 474 562 IPR036638 GO:0046983
Accr10g01495 665 PANTHER MYC 45 660 IPR045084 GO:0003700|GO:0006355
Accr10g01495 665 CDD bHLH_AtAIB_like 479 555 - -
Accr10g01495 665 Coils Coil 528 562 - -
Accr10g01495 665 MobiDBLite consensus disorder prediction 391 492 - -
Accr10g01495 665 FunFam Transcription factor bHLH13 475 549 - -
Accr10g01495 665 MobiDBLite consensus disorder prediction 418 444 - -
Accr10g01495 665 Pfam Helix-loop-helix DNA-binding domain 486 531 IPR011598 GO:0046983
Accr10g01495 665 MobiDBLite consensus disorder prediction 290 345 - -
Accr10g01495 665 MobiDBLite consensus disorder prediction 24 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01495 Accr-Chr10 38655931 38657928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01495 1 661 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.423 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g01495 bHLH-MYC_N 1.8e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01495 K13422 - vvi:100250607 832.402