Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01494 ATGAATCTTTGGACCGACGATAACTCCTCCGTCATGGATGCTTTCATAGGTTCCGATCTGTCTTCTCTCTGGCCTCCTCAGCAATCCTCAGCTTCTACGACTACCACCACTGGTACTGAACCCTCCAAATCTTTCTCCCAAAACCAGCTTTCAGTTTGCATCTTCAATCAGGAAACTCTCCAGCAACGTCTCCAGGCGCTGATTGAAATGGCCAGCGAGAGCTGGACCTATGCTATCTTTTGGCAATCTTCTTGTGATTACTCGGGAGCCTCCGTATTAGGTTGGGGGGATGGATACTACAAAGGCGAGGAGTGTAAAGGAAAGGGGAAGGCCAAAATGAGGGTGTCTTCCGCGGCGGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTTAATTCCCTAATCTCCGGGTCATCCTCCGCCCCGGATGACGCCGTAGACGAAGAAGTAACGGACACCGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTTACAACGGCGGCGGATTGCCGGGCCAGGCGTTCCTCAATTCGAGCCCGGTTTGGGTCGCCGGTTCCGACCGGTTGGCAGCTTCAACATGCGAGAGGGCAAGGCAGGGTCAGCTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCGAGTGGTGTGGTCGAACTTGGCTCCGCGGAGCTGATATTTCAAAACTCTGATCTGATGAATAAGGTCCTCAGGGATTTGTTCAATTTCAATAGCGCCGAAGCGAGTTCTATATGGCCGTCAAATATTTCAACTGCGGCTGATCAGGGTGAGAACGACCCTTCTTCACTCTGGCTCAACGATCCTTCTGCAATTGAGATTAGGGATTCTGTGACTGCTGTTGCGCCCCATTCAGTGCCCAGTTCTACCATCAGTCATAGCAATAATCCGAAGCCGATGCAGTTAGATACAAGAGGTTCCACTTCTTTGGCTGAGACCCCAACTTCCGTTCATGTCCCAAACGCTCACCATAGCCACCAACAACAACGGCAACAGCAGCGTCATTCGATGAGCCAGGGTTTCTTTTCACGGGAATTGAACTTTTCGGACTATGGATTGAACGGAAACGGTGTGAAAAACGGTCAATCTCAATTCAATGGCGAGGAGAAGAAGAGGAGGTCGCCTACGTCTAGGAGCAGCAATGACGATGGCATCCTTTCTTTCACTTCAGGCGTGGTTTTGCCTCCTTCAAATACGAAGACTGGCGGCGGCGGCGATTCTGATCCTTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGATAGTAAACTGGTAGAACCAGAGAAAAAACCTCGGAAGAGGGGACGAAAACCCGCAAATGGCAGGGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAACCAACGGTTCTATGCGCTTCGTGCCGTTGTTCCAAATGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATATCTTACATCTCTGAGCTCAAGTCGAAGCTTCAGACAATGGAATCAGACAAGAACGAATTGCAGAACCAATTGGATGCTGTGAAGAAGGAACTCGAGATAGCCCACGAAGATTCAGCGCTACCTCCACCGGAGAAAGAACCAAAGCCGTCCAACCATCAAGCCAGCAAGATTACTGATTTGGACATCGACGTGAAGATTATAGGTTGGGATGCGATGATTCGGATTCAATGCAGCAGGAAGAATCACCCAGCAGCAAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGATGTGAATCACGCGAGTGTGTCGGTGGTGAATGATTTGATGATCCAACAAGCAACAGTGAGGATGGGAAGTCAATTCTACACGCTGGAGCAACTCCGTTTAGCACTTTCGGCCAAATTTGACGATGTCCGATAG 1902 0.5005 MNLWTDDNSSVMDAFIGSDLSSLWPPQQSSASTTTTTGTEPSKSFSQNQLSVCIFNQETLQQRLQALIEMASESWTYAIFWQSSCDYSGASVLGWGDGYYKGEECKGKGKAKMRVSSAAEQEHRKKVLRELNSLISGSSSAPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSDRLAASTCERARQGQLFGLQTLVCIPSASGVVELGSAELIFQNSDLMNKVLRDLFNFNSAEASSIWPSNISTAADQGENDPSSLWLNDPSAIEIRDSVTAVAPHSVPSSTISHSNNPKPMQLDTRGSTSLAETPTSVHVPNAHHSHQQQRQQQRHSMSQGFFSRELNFSDYGLNGNGVKNGQSQFNGEEKKRRSPTSRSSNDDGILSFTSGVVLPPSNTKTGGGGDSDPSDLEASVIKEVDSKLVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYISELKSKLQTMESDKNELQNQLDAVKKELEIAHEDSALPPPEKEPKPSNHQASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVVNDLMIQQATVRMGSQFYTLEQLRLALSAKFDDVR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01494 633 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 450 499 IPR011598 GO:0046983
Accr10g01494 633 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 453 520 IPR036638 GO:0046983
Accr10g01494 633 MobiDBLite consensus disorder prediction 419 460 - -
Accr10g01494 633 SMART finulus 456 505 IPR011598 GO:0046983
Accr10g01494 633 Pfam Helix-loop-helix DNA-binding domain 454 499 IPR011598 GO:0046983
Accr10g01494 633 CDD bHLH_AtAIB_like 447 523 - -
Accr10g01494 633 Coils Coil 496 530 - -
Accr10g01494 633 FunFam Transcription factor bHLH13 443 517 - -
Accr10g01494 633 MobiDBLite consensus disorder prediction 359 460 - -
Accr10g01494 633 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 237 IPR025610 -
Accr10g01494 633 PANTHER MYC 45 628 IPR045084 GO:0003700|GO:0006355
Accr10g01494 633 Gene3D - 442 530 IPR036638 GO:0046983
Accr10g01494 633 MobiDBLite consensus disorder prediction 290 345 - -
Accr10g01494 633 MobiDBLite consensus disorder prediction 24 43 - -
Accr10g01494 633 MobiDBLite consensus disorder prediction 386 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01494 Accr-Chr10 38655931 38657928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01494 2 628 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 54.758 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g01494 bHLH-MYC_N 1.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01494 K13422 - vvi:100250607 771.926