Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01484 ATGTCTCCACCAGTTCTGACTGCTCAGGAGGAAGGGCAGAGCAACCACTCAACAATAACTTCTTCACGATCTGAGGATCGTATCTCCCAAAATGTGACTGCATTAAAAGAACGCAATTACCTCGGATTATCAGATTGTTCATCAGTGGACAGCTCTACTGTTCCAAGCGACTCAGATGAGAAAAGGAACAATCTGAATTTGAAGGCTACAGAATTGAGGTTGGGTCTTCCTGGATCCCAATCACCTGAAAGGGATGATAGCTCAACAAAACTTGATGAGAAGCCACTGTTTCCCTTGCTTCCTACAAAAGATGGAATCTGCTTGTTGTCCCAGAAAACTGTGATTACGGGCAACAAAAGGGGATTCTCTGACACCATTGATGGGTTCCCTGAGGGAAAGTTTCCCGGGACTTCTGGGGTAAATGTGCTGCTGTCTCCTAGATCTGCTAGAGCTCAACCAACCACAACAAAAGAAATGCCAACAAAAGTGTTGCAAGAACGGCCATGTGCAACTAATGGAACAGGCCATAACAAAACGGATGCTTCTATTGGTGGTAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAGAATTCATTGGCTGTCACTTCAAAGAACAATGAAGTAGATGGTAAACTGAGTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGACCTTAGGAGTTACAATACATACCAGGATCTGTCTTCTGCCCTTGAGAAAATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCACGGAGCTCCAGGAAGAGAAATGTTGAGTGAAAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTACGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCTATTGGCTTAGCAACCATGTCTAAAAGCTGGTATGCAGCAGATGGGGACCTATAG 1044 0.4483 MSPPVLTAQEEGQSNHSTITSSRSEDRISQNVTALKERNYLGLSDCSSVDSSTVPSDSDEKRNNLNLKATELRLGLPGSQSPERDDSSTKLDEKPLFPLLPTKDGICLLSQKTVITGNKRGFSDTIDGFPEGKFPGTSGVNVLLSPRSARAQPTTTKEMPTKVLQERPCATNGTGHNKTDASIGGSAPASKAQVVGWPPIRSFRKNSLAVTSKNNEVDGKLSPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLATMSKSWYAADGDL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01484 347 MobiDBLite consensus disorder prediction 45 64 - -
Accr10g01484 347 SUPERFAMILY CAD & PB1 domains 223 326 - -
Accr10g01484 347 Gene3D - 221 339 - -
Accr10g01484 347 FunFam Auxin-responsive protein 220 337 - -
Accr10g01484 347 ProSiteProfiles PB1 domain profile. 225 329 IPR000270 GO:0005515
Accr10g01484 347 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 332 IPR003311 GO:0005634|GO:0006355
Accr10g01484 347 MobiDBLite consensus disorder prediction 168 190 - -
Accr10g01484 347 MobiDBLite consensus disorder prediction 1 28 - -
Accr10g01484 347 Pfam AUX/IAA family 70 335 IPR033389 -
Accr10g01484 347 MobiDBLite consensus disorder prediction 74 94 - -
Accr10g01484 347 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01484 Accr-Chr10 38563088 38565407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01484 227 330 B3 DNA Binding Superfamily AT5G37020 31.731 2.11e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr10g01484 AUX_IAA 5.9e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01484 K14484 - gmx:547502 509.22