Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01483 ATGTCTCCACCAGTTCTGACTGCTCAGGAGGAAGGGCAGAGCAACCACTCAACAATAACTTCTTCACGATCTGAGGATCGTATCTCCCAAAATGTGACTGCATTAAAAGAACGCAATTACCTCGGATTATCAGATTGTTCATCAGTGGACAGCTCTACTGTTCCAAGCGACTCAGATGAGAAAAGGAACAATCTGAATTTGAAGGCTACAGAATTGAGGTTGGGTCTTCCTGGATCCCAATCACCTGAAAGGGATGATAGCTCAACAAAACTTGATGAGAAGCCACTGTTTCCCTTGCTTCCTACAAAAGATGGAATCTGCTTGTTGTCCCAGAAAACTGTGATTACGGGCAACAAAAGGGGATTCTCTGACACCATTGATGGGTTCCCTGAGGGAAAGTTTCCCGGGACTTCTGGGGTAAATGTGCTGCTGTCTCCTAGATCTGCTAGAGCTCAACCAACCACAACAAAAGAAATGCCAACAAAAGTGTTGCAAGAACGGCCATGTGCAACTAATGGAACAGGCCATAACAAAACGGATGCTTCTATTGGTGGTAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAGAATTCATTGGCTGTCACTTCAAAGAACAATGAAGTAGATGGTAAACTGAGTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGACCTTAGGAGTTACAATACATACCAGGATCTGTCTTCTGCCCTTGAGAAAATGTTCAGCTGTTTTACCCTAGGTCAATGTGGTTCCCACGGAGCTCCAGGAAGAGAAATGTTGAGTGAAAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTACGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGTTCTGATGCTATTGGCTTAGCTCCTAGGGCTATGGAGAAATCCAAGAACAGGTGCTAG 1038 0.4489 MSPPVLTAQEEGQSNHSTITSSRSEDRISQNVTALKERNYLGLSDCSSVDSSTVPSDSDEKRNNLNLKATELRLGLPGSQSPERDDSSTKLDEKPLFPLLPTKDGICLLSQKTVITGNKRGFSDTIDGFPEGKFPGTSGVNVLLSPRSARAQPTTTKEMPTKVLQERPCATNGTGHNKTDASIGGSAPASKAQVVGWPPIRSFRKNSLAVTSKNNEVDGKLSPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKNRC 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01483 345 SUPERFAMILY CAD & PB1 domains 223 326 - -
Accr10g01483 345 MobiDBLite consensus disorder prediction 45 64 - -
Accr10g01483 345 Gene3D - 221 338 - -
Accr10g01483 345 Pfam AUX/IAA family 70 336 IPR033389 -
Accr10g01483 345 ProSiteProfiles PB1 domain profile. 225 329 IPR000270 GO:0005515
Accr10g01483 345 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 332 IPR003311 GO:0005634|GO:0006355
Accr10g01483 345 MobiDBLite consensus disorder prediction 1 28 - -
Accr10g01483 345 MobiDBLite consensus disorder prediction 168 190 - -
Accr10g01483 345 MobiDBLite consensus disorder prediction 74 94 - -
Accr10g01483 345 FunFam Auxin-responsive protein 220 337 - -
Accr10g01483 345 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01483 Accr-Chr10 38563088 38565837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01483 227 330 B3 DNA Binding Superfamily AT5G37020 31.731 1.69e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr10g01483 AUX_IAA 3.2e-89 CL0072