LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01481	ATGGCCAATACTTTCTGCTATTCCCATCTCCTTCTTCCTCTGTTATTCTCCTTCTCCTCCTCGTTTCTTTCTGTGAACTCACTTTACTTTCAAAGGTCTGGATTTGCCTCTAATGATGCCGACATTCTCTACATGGGATCTGCAGGCTCTGTAGTTGGTACTGTTCGATTCAACTTGAATGATAAGTATACTTGTCAAGTAGGATGGGCTATTTATGCTAGAAGGGTAAAACTTTGGGACTCAAGTACTGGACACATCACTGACTTCACTTCTCATTATACTTTCACAATAGACACTCAAGGTCAAACTACTCATGGCCATGGACTTTGCTTCTTCCTCGCTCCTTCTGGTTTTGAAATCCCTCCAAATTCTGCTGCTGGCTTTCTAGGCCTATTCAATACCACAACTAGTCTTTCATCTCAGAGCCAGATTGTTCATGTGGAGTTTGACTCTTACCCAAATTCTGAATGGGGTGAGACCACAGAACATGTGGGAATCAACAATCATTCTGTTGTTTCATCAGTGTCTACCTTTTGGAATGCTAGCCTACACAGTGATGATGCTGCAGATGTGTGGATCACCTACAACTCTGCATCGAAGAACTTGAGTGTAACATGGAAATATCAGAGCACACAGAGTCCTCAAGAGAACAATACTCTTTCTTATCTAATTGATTTATCCAAGGCTTTGCCTGAATGGGTTACAGTTGGATTTTCTGGTGCAACAGGATCGGTTGGAGAACTTCACACTCTTCTCTCTTGGGAGTTCAACTCAACTTTGGATGATACTGAACAAGGCAAAAACAAGACAACACTTATAGTGGTTCTGGGCACTGTTTTAGGGAGTATTGTTTTGATAGTTGGAGGAGCAATAGTAGCATATGCATTACTTAGGAGGAAGAAGGAAATGAAAAGCAAAAAGGAAGAAGGTATGAACTTAACATCAATGAATGACGATCTTGAAAGAGGAGCAGGACCAAGAAGATTCTCTCACAGAGAGCTTGCTAAAGCTACCAATAATTTCTCGAACGACAGGAAACTTGGTCAAGGTGGGTTTGGAGCCGTTTACAGAGGTTATTTTCCTCATATGGACTTAACCGTTGCGGTGAAAAAAATATCAAAAGGATCAAGGCAAGGGAAAAGAGAGTATGTAACCGAGGTTAAGATCATTAGTCAGCTAAGACACAGGAATCTTGTGCAGCTAATCGGTTGGTGTCATGAAAAAGGCAACTTCCTACTTGTTTATGAGCTCATGCCAAATGGTAGCCTTGATGCTCACTTGTCAGGGAAGAAGCCTCCTCTTCCATGGAACATGAGGCACAAGATAGCTCTAGGATTAGCCTCAGGAGTGCTCTACCTTCATGAAGAATGGCAACAATGCGTGGTTCACAGAGATATCAAATCAAGCAACGTGATGCTAGATTCCAATTTCAATGTAAAACTTGGAGACTTCGGGTTGGCAAAGCTCGTGGACCATGATCTCGGACCCCAAACAACACGATTGGCAGGCACAATGGGCTATATGGCTCCAGAATATGTGAGTACAGGAAGGGCCAGTAAGGAGTCCGATGTTTATAGTTTTGGGGTGGTTGCCTTAGAGATAGCCACCGGAAGAAAGGCGAATGACCTTATGAAACATGGAGACGCAGAAATAGGATTGATTGAGTGGGTTTGGGATCATTATGGGAGAGGAGAGCTAACTTTGGCCATGGATGAAATTTTGCAGAAGGAATATAATGAGAGAGAAGTGGAGTGTTTGATGATTGTAGGGCTATGGTGTGCCCACCCAGATAAGAATTTAAGGCCAACCATTAGGCAAGCAATTCAAGTTTTGTGCTTTGAGGCTGTCCTGCCAGATCTTCCATCAAAGAAGCCTGTTCCTATGTATCATGTTCCCACACCAAACGTTGTCTCCCAAGGTGCTTCCTTGACCACAACTCTGCAAACAGGTCGTTGA	1956	0.4305	MANTFCYSHLLLPLLFSFSSSFLSVNSLYFQRSGFASNDADILYMGSAGSVVGTVRFNLNDKYTCQVGWAIYARRVKLWDSSTGHITDFTSHYTFTIDTQGQTTHGHGLCFFLAPSGFEIPPNSAAGFLGLFNTTTSLSSQSQIVHVEFDSYPNSEWGETTEHVGINNHSVVSSVSTFWNASLHSDDAADVWITYNSASKNLSVTWKYQSTQSPQENNTLSYLIDLSKALPEWVTVGFSGATGSVGELHTLLSWEFNSTLDDTEQGKNKTTLIVVLGTVLGSIVLIVGGAIVAYALLRRKKEMKSKKEEGMNLTSMNDDLERGAGPRRFSHRELAKATNNFSNDRKLGQGGFGAVYRGYFPHMDLTVAVKKISKGSRQGKREYVTEVKIISQLRHRNLVQLIGWCHEKGNFLLVYELMPNGSLDAHLSGKKPPLPWNMRHKIALGLASGVLYLHEEWQQCVVHRDIKSSNVMLDSNFNVKLGDFGLAKLVDHDLGPQTTRLAGTMGYMAPEYVSTGRASKESDVYSFGVVALEIATGRKANDLMKHGDAEIGLIEWVWDHYGRGELTLAMDEILQKEYNEREVECLMIVGLWCAHPDKNLRPTIRQAIQVLCFEAVLPDLPSKKPVPMYHVPTPNVVSQGASLTTTLQTGR	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01481	651	SMART	serkin_6	341	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr10g01481	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Accr10g01481	651	Gene3D	-	25	275	-	-
	Accr10g01481	651	FunFam	L-type lectin-domain containing receptor kinase IX.1	326	417	-	-
	Accr10g01481	651	FunFam	L-type lectin-domain containing receptor kinase IX.1	26	269	-	-
	Accr10g01481	651	CDD	STKc_IRAK	347	612	-	-
	Accr10g01481	651	Gene3D	Transferase(Phosphotransferase) domain 1	418	632	-	-
	Accr10g01481	651	Gene3D	Phosphorylase Kinase; domain 1	326	417	-	-
	Accr10g01481	651	FunFam	Lectin-domain containing receptor kinase A4.3	418	631	-	-
	Accr10g01481	651	Pfam	Legume lectin domain	28	267	IPR001220	GO:0030246
	Accr10g01481	651	ProSitePatterns	Protein kinases ATP-binding region signature.	347	371	IPR017441	GO:0005524
	Accr10g01481	651	ProSiteProfiles	Protein kinase domain profile.	341	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr10g01481	651	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	264	IPR013320	-
	Accr10g01481	651	Pfam	Protein kinase domain	342	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr10g01481	651	PANTHER	-	55	612	-	-
	Accr10g01481	651	CDD	lectin_legume_LecRK_Arcelin_ConA	30	260	IPR001220	GO:0030246
	Accr10g01481	651	ProSitePatterns	Legume lectins alpha-chain signature.	230	239	IPR000985	-
	Accr10g01481	651	SUPERFAMILY	Protein kinase-like (PK-like)	325	635	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01481	Accr-Chr10	38507036	38508991	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01481	14	630	Receptor kinase-like Gene Family	AT5G10530	57.987	0.0	727

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Accr10g01481		Pkinase	6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01481	-		-	qsa:O6P43_033286	861.677