Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01477 ATGGAGCTCACACAAGTTGGTTTTTTGGAAGAGTTACTTGCTCCAAGAAGAGGAGACTCATGGAATAATACTATCTCCTCTGGTTTTAATGAGCTATTTCCTTCTACCTCTTGGTGTTTTGACTCTTTTGAAGACAACAACCCTTCAAATTTTTCTACCTTCAATAATCCTCCATTTTCATCACTACCAGCTCCACTTTCAGACCACAGACTTGACTATAGTTCCTACCCATTTCTTGATGGCTTCGAAGGGACCACTGTTGACTCTGCACCACCACTTCAAGCTCATGAAGATGAAGACCTTGCCTTTCTGGGTTTTGAGAATCAGAGTTCTGAAGAAGGAAACACCACCACCACCACCAACAATAATAATAATGCCACTAATTGCTGCAAAGTCGAAGAACAAGCCTTCGAACAAGCTCCAGTATTCAACATGGGTGTGTGTTGTGAGGAGAAGAAACCCAAATCGAAGAAGCTAGAAGGTCAGCCCTCTAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAACGCCTCAATGATCGCCTGTCCATGCTAAGATCAATCGTCCCCAAGATCAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGATTACATGAAGGAGCTTCAGGAAAAGATAAGCAAGTTACAGGAAGAAATGCACAAGGAGGGTGAAAATAATGAGTTGAATTTCATAGGCATTTCCAAGGAGGTGAAGCCAAATGAAGTAATGGCGAGAAATTCCCCTAAGTTTGAGGTTGAGAGGAGAGACCAGGACACAAGGATCGACATCTGCTGTGCTACAAAGCCTGGATTACTACTCTCAACAGTGAATACCTTGGAAGCGTTAGGTCTTGAGATTCAACAATGTGTGATAAGTGGCTTCAATGATTTCACAATGCAAGCTTCTTGCTCAGAGGTGTCTGAGCAGAGAGCTTGTATGGACTCTGAGGAGATTAAGGAAGCACTGTTCAGAAACGCAGGTTATGGTGGGAGATATCTGTAG 1008 0.4296 MELTQVGFLEELLAPRRGDSWNNTISSGFNELFPSTSWCFDSFEDNNPSNFSTFNNPPFSSLPAPLSDHRLDYSSYPFLDGFEGTTVDSAPPLQAHEDEDLAFLGFENQSSEEGNTTTTTNNNNNATNCCKVEEQAFEQAPVFNMGVCCEEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELQEKISKLQEEMHKEGENNELNFIGISKEVKPNEVMARNSPKFEVERRDQDTRIDICCATKPGLLLSTVNTLEALGLEIQQCVISGFNDFTMQASCSEVSEQRACMDSEEIKEALFRNAGYGGRYL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01477 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 58 329 - -
Accr10g01477 335 Coils Coil 200 227 - -
Accr10g01477 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 223 IPR036638 GO:0046983
Accr10g01477 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Accr10g01477 335 Gene3D - 152 228 IPR036638 GO:0046983
Accr10g01477 335 Pfam Helix-loop-helix DNA-binding domain 167 211 IPR011598 GO:0046983
Accr10g01477 335 SMART finulus 167 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01477 Accr-Chr10 38382828 38384126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01477 152 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.478 1.15e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g01477 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01477 - - gmx:100806571 402.905