Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01456 ATGTATAATGGGATCGTTACCGTTACATTGTCAAGGCCAGACGGCAATTTGATAGGAGTATCCTATAATGGGATTGATAACCTTCTTGAACCTCGTACTCATCCTGCTAATAGAGGGTATTGGGACTTTTCTTGGAACGCACCAGGTTACCGCAGTAACTATGACAGATTCAGAGGGACAACGTTTTCTGTTATAGTGGAGAACAAAGACCAAGCCGAAGTTTCTTTCTTATACACATGGAATCCTACCTCGCCTGCAAGAAGCATGCCAATGAATATAGATATAAGGTATATTTTACGTAGAGGCAGCTCAGGATTATATTCATATGCCATATTGGAGCGTCTAGAAGGTTTTCCTGCCATTCGGGTGGATGTCTTTAGGCTCACTTATAAGCTCAACCAATACCTGTTCCATTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCTAGTGCTGAAGATAGATCCAAAGGCCAAACCCTTGATTATCCTGAAGCTGTCCTATTAACCAATCCTAGTAACCATGAATTCTTAGGGGAGGTGGATGATAAATACATGTACTCGGTTGAGAACAAAGACAACAAAGTTAACGGATGGGTCTCTTTCAACACTCCCAATTCTTCATCAGTTGGGTTCTGGATGATTACACCCAGCAACGAATTCCGTAATGGTGGACCTACCAAGCAAAGTCTCACCTCTCATGTTGGCCCTGTCACCCTCAACTCTTTCCTGAGCCCACACTATGCTGGGAAGGACATATCCATGTTCTTCAGAGAGGGAGAGACCTATAAGAAGGTATTTGGCCCCACCTTTTTGTACCTCAACACTGTTCCAAATCCCCATGATTCTCAGACTCTCTGGGGGGATGCTAAAAACCAGATGCAAAAAGAAGTTGAAAGCTGGCCCTATGATTTCCCAAGATCAAAAGACTTCATTCCGTCCAATCAACGGGGAAAAGTGTCTGGACAATTACTAATCACAGGGTACCCTGCCAGTATTCCATCTGGTAATGCTAACGTTGGCCTGGCCCTCCCAGGATATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCTGATAACAGTGGCTTGTTTACCATACAAAATGTTGTGCCTGGGGTCTATAACTTGTATGCTTGGGTGCCTGGCATTCTTGGTGATTACAAATACGAGTTTGACATTACCATCAAACCAGGAGATGCCATAGAATTAGGTCAGTTAAATTATAGGCCTCCAAGAAATGGTCCAACGGTTTGGGAAATTGGGATTCCTGATCGATCAGCCCAAGAGTTTTATGTGCCAGACCCATATCCTAACCTCATTAACAAGTTATTTTTAGGAAAGCCCAATCACAGGTTTAGACAATACGGTTTGTGGAAACGCTACTCTGAATTATATCCAACTAATGACCTCGTTTACCATGTTGGTGTCAGTGATTATTCCAAACATTGGTTCTATGCTCAGGTCCCCAGGGGCCTGGGAAATGGCACATACACTTCAACAGTATGGGAGATAAGATTTGAATTGCCATTTGTGATTCCAGGAAGTTATACACTACATATTGGCTTAGCATCATCCAGCAGTTATCACTTGCGTGTTTGGTTCAATAATGGCGCTGATCGTCGCATGCGGTTCAATACAAGATTAAGAGGAGGAGATCAGGACAATGCAATAGCAAGGCATGGTATACATGGATTGTGCTGGTGGTACAGTTACCAAGTGCCAAGCTATCTACTTATGAATGGAACCAACTCTATTTACCTCTCACCATTCAGAGTCTTTTCTCCTCTTCAAGGTATTATGTATGATTATATCCGTCTTGAAAGCCCCTAG 1851 0.43 MYNGIVTVTLSRPDGNLIGVSYNGIDNLLEPRTHPANRGYWDFSWNAPGYRSNYDRFRGTTFSVIVENKDQAEVSFLYTWNPTSPARSMPMNIDIRYILRRGSSGLYSYAILERLEGFPAIRVDVFRLTYKLNQYLFHYMAITDERQREMPSAEDRSKGQTLDYPEAVLLTNPSNHEFLGEVDDKYMYSVENKDNKVNGWVSFNTPNSSSVGFWMITPSNEFRNGGPTKQSLTSHVGPVTLNSFLSPHYAGKDISMFFREGETYKKVFGPTFLYLNTVPNPHDSQTLWGDAKNQMQKEVESWPYDFPRSKDFIPSNQRGKVSGQLLITGYPASIPSGNANVGLALPGYEGSWQTESKGYQFWTQADNSGLFTIQNVVPGVYNLYAWVPGILGDYKYEFDITIKPGDAIELGQLNYRPPRNGPTVWEIGIPDRSAQEFYVPDPYPNLINKLFLGKPNHRFRQYGLWKRYSELYPTNDLVYHVGVSDYSKHWFYAQVPRGLGNGTYTSTVWEIRFELPFVIPGSYTLHIGLASSSSYHLRVWFNNGADRRMRFNTRLRGGDQDNAIARHGIHGLCWWYSYQVPSYLLMNGTNSIYLSPFRVFSPLQGIMYDYIRLESP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01456 616 Pfam Rhamnogalacturonate lyase family 2 182 IPR010325 -
Accr10g01456 616 SUPERFAMILY Galactose mutarotase-like 6 283 IPR011013 GO:0003824|GO:0005975|GO:0030246
Accr10g01456 616 CDD RGL4_N 3 284 - -
Accr10g01456 616 Pfam Polysaccharide lyase family 4, domain III 423 613 IPR029411 -
Accr10g01456 616 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 616 - -
Accr10g01456 616 Gene3D - 421 614 - -
Accr10g01456 616 Gene3D - 313 410 - -
Accr10g01456 616 Gene3D - 7 291 IPR014718 GO:0030246
Accr10g01456 616 Pfam Polysaccharide lyase family 4, domain II 339 409 IPR029413 -
Accr10g01456 616 CDD RGL4_M 317 413 IPR029413 -
Accr10g01456 616 CDD RGL4_C 425 614 - -
Accr10g01456 616 SUPERFAMILY Starch-binding domain-like 314 410 IPR013784 GO:0030246
Accr10g01456 616 SUPERFAMILY Galactose-binding domain-like 420 614 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01456 Accr-Chr10 37996005 38000536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01456 1 616 Polysaccharide Lyase AT1G09890 52.809 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01456 K18195 - gmx:100792575 794.653