Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01425 ATGGATTTTGAGGATCAAGAGGAGCAAGAAGAGGAGATCGGAATGGAGTCACTGGGGATATCTCCGAGAGTGAAAATGCCGATGACCTCCGCCGGTGGTGCTGGAGAAGCTGTGGTGTTGCCTCAACCCACAAGGAGTTATTATAACAGTAATAATAACAGTAAGGGAAGGTATAGAGAGTGCTTGAAGAACCACGCGGTGGGTCTCGGCGGACACGCGCTTGATGGTTGTGGTGAGTTCATGCCGGCCGGAGCTGAAGGCACACTCGACGCTCTCAAATGCGCCGCCTGTAACTGCCACCGCAATTTCCATCGCAAAGAGACCGAACCATTTTTGTTGACCCCCCATTACCACCACCACCAGCAGCTGCCGCCGCCGCAGTTCGCGGCGGCATATTATCGAGCTCCGGCAGGGTACTTACACGTGGCAGGGCAGCACAGGGGAGGGCAGGGGACCCTGGCACTGCCGTCCACGTCGGGAGGAGGTGGCGGGACACAGAGCACGAGAGACGATCAGGACGACGACGTTTCAAACCCAAGCGGCGGCGGCGGCGGCGGGGGAGGGTCGTCCTCGGGGAAGAAGAGGTTCAGGACGAAGTTCACGCAGGAACAGAAGGATAAAATGCTGGAACTTGCAGAGAGATTGGGATGGAGGATTCAGAAGCAAGATGAAGAATTGGTGCAGCAATTCTGTAACGAAATGGGAGTGAAGCGTCAGGTTCTTAAGGTTTGGATGCACAACAACAAGCACACTGTGGGTAAGAAGCCCTAG 771 0.5564 MDFEDQEEQEEEIGMESLGISPRVKMPMTSAGGAGEAVVLPQPTRSYYNSNNNSKGRYRECLKNHAVGLGGHALDGCGEFMPAGAEGTLDALKCAACNCHRNFHRKETEPFLLTPHYHHHQQLPPPQFAAAYYRAPAGYLHVAGQHRGGQGTLALPSTSGGGGGTQSTRDDQDDDVSNPSGGGGGGGGSSSGKKRFRTKFTQEQKDKMLELAERLGWRIQKQDEELVQQFCNEMGVKRQVLKVWMHNNKHTVGKKP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01425 256 SUPERFAMILY Homeodomain-like 180 254 IPR009057 -
Accr10g01425 256 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Accr10g01425 256 MobiDBLite consensus disorder prediction 147 196 - -
Accr10g01425 256 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 251 - -
Accr10g01425 256 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Accr10g01425 256 FunFam Zinc-finger homeodomain protein 2 187 254 - -
Accr10g01425 256 NCBIfam homeobox domain, ZF-HD class 193 249 IPR006455 -
Accr10g01425 256 Gene3D - 180 253 - -
Accr10g01425 256 Pfam ZF-HD protein dimerisation region 57 108 IPR006456 -
Accr10g01425 256 MobiDBLite consensus disorder prediction 151 167 - -
Accr10g01425 256 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01425 Accr-Chr10 37620128 37620898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01425 1 252 ZF-HD Transcription Factor Family AT4G24660 47.656 1.50e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr10g01425 ZF-HD_dimer 3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01425 - - qsa:O6P43_025228 278.1