Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01388 ATGGAACAAATCTACGGAGCGCCTTTGTCGGCGGACTACTCTGACAAGGCCTTGATGACGCCGGAGAACCTCATATTCGACGCTGATTATCAGAGTTTTCTCCCCTCCTCCTCCTCCTCCGGCGGCTTCCACGATCGGAATCCGATGTTCGGATCCGACGACCTGCTTTCCGCCATTACCGAAGCTGAACCGCCGTATGTTGCACCTGAAATTCAACCTGACGACGATGCCTCCACTTCCTCTCTCATCAAAGCTAAAATCGCTTCTCATCCTCACTATCCTCGTCTCCTTCAAGCTTTCATCGATTGTCAGAAGGTAGGGGCGACTCCAGAAATAGCGTGTCTGTTAGATGAAATCAAGCGAGAAAATGATGTTCGTAAGCGAGAGGTTGTTTCCACGTGCTTCGGTGACGATCTCGAGCTCGACGAGTTCATGGAAACGTATTGCGATCTTCTGATAAAGTATAAATCTGACCTTTCCCGGCCTTTTGACGAAGCCACTACTTTCCTCAACGACATCCAAATCCAGCTCAGCCATCTCTGCTCTGGTGCCTCCGTTCCTACCCTCTCCGATGATGGAGGCATGTCTTCCGAAGATGGTGATGCAGAAGATGCAAGCGGATCGCGGGGGGAAGATCGGGAGCTAAAGGATAGGCTTTTAAATAAGTTTGGGCGTCGGATTAGTAGTTTGAAATTGGAGTTCTCCAAGAAGAAGAAGAAAGGCAAACTTCCCAAGGAAGCTAGGCAAACGCTTCTTGACTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGGGGATAAGATAGAACTGGCAAAGTCGACGGGGCTGGATCAAAAGCAAATCAACAATTGGTTTATTAATCAGAGGAAGCGTCACTGGAAACCCTCCGAGAACCTTCACTTATCTGTTACGGATACTCTCACTGGAGGCTTCTACTCCGATCCTCGTGTATGA 960 0.4906 MEQIYGAPLSADYSDKALMTPENLIFDADYQSFLPSSSSSGGFHDRNPMFGSDDLLSAITEAEPPYVAPEIQPDDDASTSSLIKAKIASHPHYPRLLQAFIDCQKVGATPEIACLLDEIKRENDVRKREVVSTCFGDDLELDEFMETYCDLLIKYKSDLSRPFDEATTFLNDIQIQLSHLCSGASVPTLSDDGGMSSEDGDAEDASGSRGEDRELKDRLLNKFGRRISSLKLEFSKKKKKGKLPKEARQTLLDWWNVHYKWPYPTEGDKIELAKSTGLDQKQINNWFINQRKRHWKPSENLHLSVTDTLTGGFYSDPRV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01388 319 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Accr10g01388 319 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Accr10g01388 319 MobiDBLite consensus disorder prediction 190 212 - -
Accr10g01388 319 Pfam KNOX2 domain 135 181 IPR005541 GO:0003677|GO:0005634
Accr10g01388 319 SMART HOX_1 236 301 IPR001356 GO:0003677
Accr10g01388 319 SMART KNOX1_2 81 125 IPR005540 GO:0003677|GO:0005634
Accr10g01388 319 Gene3D - 232 304 - -
Accr10g01388 319 SMART ELK_2 214 235 IPR005539 GO:0003677
Accr10g01388 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 302 - -
Accr10g01388 319 SMART KNOX2_2 131 182 IPR005541 GO:0003677|GO:0005634
Accr10g01388 319 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Accr10g01388 319 CDD homeodomain 246 298 IPR001356 GO:0003677
Accr10g01388 319 Pfam ELK domain 214 235 IPR005539 GO:0003677
Accr10g01388 319 SUPERFAMILY Homeodomain-like 235 307 IPR009057 -
Accr10g01388 319 ProSiteProfiles ELK domain profile. 214 234 IPR005539 GO:0003677
Accr10g01388 319 Pfam KNOX1 domain 83 124 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01388 Accr-Chr10 37061834 37067927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01388 1 316 Homeobox Transcription Factor Family AT1G23380 62.538 7.26e-136 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr10g01388 KNOX2 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01388 - - gmx:100803730 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01208 9 15510974 15520119 Accr10g01388 10 37061834 37067927 CCT