Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01349 ATGAAAGGAGGAGAAGGGAAGGAGTACAAGAAGGGACGGTGGACGGAGGAAGGAGACAGGGTTTTGATGGAATACGTTAGGGTTCATGGAAGAACCCACTGGAACCGCATTTGCAAAATCACTGGTTTAATGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTATCTGAGTCCAAACGTCAAACATGGAAGTTTCTCTGAGGAAGAAGACGATCTCATCATTCGTCTTCATAATCTCCTTGGAAACAGGTGGTCTTTAATAGCCGGAAGGGTGCCTGGAAGAACAGACAACCAAGTAAAGAACCATTGGAACACTCATTTTTGCAAGAAACTTGGTATCACTAAGCGAACCAAAAAACCTATTAAGGACAAGGTTTCTGCGAAACCCAGAGCTTCACAAATAGAAGAGGCTCAAAATGTTCACATGTCTTCGAGTTCTATGGATATCATTCCTCTCACTCTCAACAACAAAGAAGACAAAGAAGCTGAGGTACAACTAGGCCAAGGAAGCTATATGAACAACAATCCTACAACAAACACTATTGAAGAATTACAACGTTATTGGCCACCCACAGAATGGGATGATCACCACTTTGATCAAACTTTTATGTTTGATGATTATCATACTTTTGTTCTACATAGTCCTCCTAGGTTAATGGAATTTCTTGATGGATTCGATGTAATTTAG 693 0.4113 MKGGEGKEYKKGRWTEEGDRVLMEYVRVHGRTHWNRICKITGLMRSGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHFCKKLGITKRTKKPIKDKVSAKPRASQIEEAQNVHMSSSSMDIIPLTLNNKEDKEAEVQLGQGSYMNNNPTTNTIEELQRYWPPTEWDDHHFDQTFMFDDYHTFVLHSPPRLMEFLDGFDVI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01349 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Accr10g01349 230 FunFam MYB-related transcription factor 10 63 - -
Accr10g01349 230 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Accr10g01349 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Accr10g01349 230 Gene3D - 4 64 - -
Accr10g01349 230 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Accr10g01349 230 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Accr10g01349 230 SMART sant 63 111 IPR001005 -
Accr10g01349 230 SMART sant 10 60 IPR001005 -
Accr10g01349 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 172 - -
Accr10g01349 230 Gene3D - 66 143 - -
Accr10g01349 230 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Accr10g01349 230 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Accr10g01349 230 CDD SANT 66 109 IPR001005 -
Accr10g01349 230 FunFam Transcription factor WER 65 140 - -
Accr10g01349 230 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01349 Accr-Chr10 36635935 36639663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01349 2 115 MYB Transcription Factor Family AT5G40330 71.930 7.68e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g01349 Myb_DNA-binding 2.5e-12 CL0123