Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01347 ATGATGAAAGGAGGAGAAGGGAAGGAGTACAAGAAGGGACTGTGGACGGAGGAAGAAGACAGGGTTTTGATGGAATACATTAGGGTTCATGGAAGAACCCACTGGAACCGCATTTCCAAAATCACTGGTTTAATGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTATCTGAGTCCAAACGTCAAACATGGAAGTTTCTCTGAGGAAGAAGACGATCTCATCATTCGTCTTCATAATCTCCTTGGAAACAGGTGGTCTTTAATAGCAGGAAGGGTGCCTGGAAGAACAGACAACCAAGTAAAGAACCATTGGAACACTCATTTGTGCAAGAAACTTGGTATTACTAAGCAAATCAAAAAACCTAATAAGGACAAGGTTTCTACAAAACTTAGAGCTTCCCAAACAGAAGAGGCTCAGAATGTTCTCATGTCTTCGAGTATTATGGATATTGTTCCTCTCACTCTCAACAACAAAAAAGACAAAGAAGCTGAGGTACAATTAGGCCAAAGAAGCTATGTGAACAACAATCCCGCAACAAACAATATTGAAGAATTACAACATTGCTGGCCACCCACAGAATGGGATGATCATCACTTTGATCAAACTTTTATGTTTGATGATGATCATACTTTTGTTCTACATAGTCCTCCTAGTTTAATGGAATTTCTTGATGGATTCGATGTAATTTAG 696 0.398 MMKGGEGKEYKKGLWTEEEDRVLMEYIRVHGRTHWNRISKITGLMRSGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGITKQIKKPNKDKVSTKLRASQTEEAQNVLMSSSIMDIVPLTLNNKKDKEAEVQLGQRSYVNNNPATNNIEELQHCWPPTEWDDHHFDQTFMFDDDHTFVLHSPPSLMEFLDGFDVI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01347 231 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Accr10g01347 231 SMART sant 11 61 IPR001005 -
Accr10g01347 231 SMART sant 64 112 IPR001005 -
Accr10g01347 231 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Accr10g01347 231 Gene3D - 66 142 - -
Accr10g01347 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 172 - -
Accr10g01347 231 Gene3D - 5 65 - -
Accr10g01347 231 CDD SANT 67 110 IPR001005 -
Accr10g01347 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Accr10g01347 231 FunFam MYB-related transcription factor 11 64 - -
Accr10g01347 231 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Accr10g01347 231 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Accr10g01347 231 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Accr10g01347 231 CDD SANT 15 59 IPR001005 -
Accr10g01347 231 FunFam Transcription factor WER 66 141 - -
Accr10g01347 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01347 Accr-Chr10 36613147 36616247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01347 1 116 MYB Transcription Factor Family AT5G40330 73.276 2.24e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g01347 Myb_DNA-binding 1.1e-13 CL0123