Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01338 ATGTCGCGGGTTTATGTTGGGAATTTGGACCCTCAGGTCACTGAGAGGGATCTTGAAGATGAATTTCGTATCTACGGCGTTCTGCGGAGCGTCTGGGTTGCTCGAAGGCCACCAGGTTATGCATTTCTTGAATTTGATGATAGGAGGGATGCCCTTGATGCAATTCATGCTCTGGATGGAAAAAATGGCTGGCGCGTAGAGCTTTCTCATAATTCCAAAGGTGGTGGAGGACGGGGCGGACGTGGACGTGGTGGTGAGGACTTAAAATGTTATGAGTGTGGCGAGCCTGGTCATTTTGCTAGGGAGTGCCGCATGCGTATTGGTTCACGAGGCTTTGGAAGTGGGCATCGACGAAGCCCTAGTCCATATCGGCGCCGTAGAAGTCCAAGTTATGGTCGCAGGAGCTATAGCCCTATTGGAAGAAGATCTCCTAGGCGACGTAGTATTACACCTCCTCGACGTGGTCGCAGTTACAGCAGGTCCCCTCCATATCGTCGCTCTCGCCGTGACTCTCCTTATGCTAATGGAGATTAA 534 0.515 MSRVYVGNLDPQVTERDLEDEFRIYGVLRSVWVARRPPGYAFLEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGRGRGGEDLKCYECGEPGHFARECRMRIGSRGFGSGHRRSPSPYRRRRSPSYGRRSYSPIGRRSPRRRSITPPRRGRSYSRSPPYRRSRRDSPYANGD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01338 177 CDD RRM_SRSF3_like 3 71 - -
Accr10g01338 177 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Accr10g01338 177 MobiDBLite consensus disorder prediction 109 177 - -
Accr10g01338 177 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Accr10g01338 177 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Accr10g01338 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Accr10g01338 177 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Accr10g01338 177 FunFam Serine/arginine-rich splicing factor RSZ21A isoform C 77 148 - -
Accr10g01338 177 Gene3D - 85 150 - -
Accr10g01338 177 SMART rrm1_1 3 69 IPR000504 GO:0003723
Accr10g01338 177 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Accr10g01338 177 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 167 - -
Accr10g01338 177 SUPERFAMILY Retrovirus zinc finger-like domains 79 107 IPR036875 GO:0003676|GO:0008270
Accr10g01338 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Accr10g01338 177 Gene3D - 2 69 IPR012677 -
Accr10g01338 177 MobiDBLite consensus disorder prediction 163 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01338 Accr-Chr10 36493695 36495239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01338 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 41.935 2.38e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01338 K12896 - jre:109019839 213.386