Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01329 ATGTCTTGGGTTCACTCTCAAATTCTGCAGAACAATGGTCACATGGCTGGCCAGCCAATTCTTTCTCCATCTCCTTCTTCTCCTCCATTGCCTTACATTTCTAACTTCCAGAAGCAAATAAGCCCTTCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCAGTTCTTTTCATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTGCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCGATTTCTCAATCCAATAGATACCCAGATACGTCAGAATCAGATGCTTACCAGAGACAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTCATAGATGCTCTTCCTGTATTCTTTTACAAGGAGATAATTGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAATTCTCAGATCATGACAAGCTTAGGTTGCTGCCTATGTGCAACCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTACACACCAGGATTTCCCTTTGAAAACCCAGCTTTTAACTTTGAAGAGCCAAGGGAAGAAGATGGGTTTTCAGCAGGCACTGTTGGAGGTGATGCTGCTTCTGTTCACAAACATGCAGAAAATCACATTATGAGTGGAAGAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAGCTCAAATACCAGACAAGGAGTAGAAAAATGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTCCAGTATGTTGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCCAATAGGGGTGATGTGAGTAGTGGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGGAATAATCCCTCTGCTGATTCTGACTTTGAGGGCAAAAACAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTTACCCATATGGGAAATTCTACTAATGTCACTGCAAATTTGTCTTGGATGAATAGAACTAGAGGTGTCTGA 1140 0.4114 MSWVHSQILQNNGHMAGQPILSPSPSSPPLPYISNFQKQISPSPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDTSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDHDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYTPGFPFENPAFNFEEPREEDGFSAGTVGGDAASVHKHAENHIMSGRRVFSVRLGKFRSSNTRQGVEKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSGSMRQLKVRVAQIGNNPSADSDFEGKNNIARKGESFSVSKIWLWSKKDKLPSSSVTHMGNSTNVTANLSWMNRTRGV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01329 379 FunFam RING-H2 finger protein ATL46 106 191 - -
Accr10g01329 379 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Accr10g01329 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
Accr10g01329 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 344 - -
Accr10g01329 379 CDD RING-H2_EL5-like 143 186 - -
Accr10g01329 379 SMART ring_2 144 185 IPR001841 -
Accr10g01329 379 Pfam Ring finger domain 143 186 IPR001841 -
Accr10g01329 379 SUPERFAMILY RING/U-box 123 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01329 Accr-Chr10 36346375 36347623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01329 41 357 C3H Transcription Factor Family AT2G18650 40.290 2.83e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01329 - - gmx:100818135 473.396