Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01327 ATGCCATATTTTGCAATGTCTTGGGTTCACTCTCAAATTCTGCAGAACAATGGTCACATGGCTGGCCAGCCAATTCTTTCTCCATCTCCTTCTTCTCCTCCATTGCCTTACATTTCTAACTTCCAGAAGCAAATAAGCCCTTCTCCAGTTTCTTCATCTGGGAACAAAATAAGTCCAGCAGTTCTTTTCATCATAGTTGTTCTAGCTATTGTGTTTTTCATTTCGGGTCTGCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTTCATCGATTTCTCAATCCAATAGATACCCAGATACGTCAGAATCAGATGCTTACCAGAGACAGTTACAGCAGCTGTTTCATCTTCATGATTCAGGACTGGATCAGGCTTTCATAGATGCTCTTCCTGTATTCTTTTACAAGGAGATAATTGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAATTCTCAGATCATGACAAGCTTAGGTTGCTGCCTATGTGCAACCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTACACACCAGGATTTCCCTTTGAAAACCCAGCTTTTAACTTTGAAGAGCCAAGGGAAGAAGATGGGTTTTCAGCAGGCACTGTTGGAGGTGATGCTGCTTCTGTTCACAAACATGCAGAAAATCACATTATGAGTGGAAGAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAGCTCAAATACCAGACAAGGAGTAGAAAAATGTGAAGGAGAGAGCAGTGCTAGTAGTAGTAATTTGGATGCAAGGAGATGCTATTCAATGGGGTCTTTCCAGTATGTTGTTGCTGATTCAGATTTAAGAGTAGCTTTATGCCCCAATAGGGGTGATGTGAGTAGTGGCAGTATGAGACAGTTGAAAGTGCGAGTAGCTCAAATTGGGAATAATCCCTCTGCTGATTCTGACTTTGAGGGCAAAAACAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGTTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTTACCCATATGGGAAATTCTACTAATGTCACTGCAAATTTGTCTTGGATGAATAGAACTAGAGGTACATGA 1155 0.4095 MPYFAMSWVHSQILQNNGHMAGQPILSPSPSSPPLPYISNFQKQISPSPVSSSGNKISPAVLFIIVVLAIVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDTSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSDHDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYTPGFPFENPAFNFEEPREEDGFSAGTVGGDAASVHKHAENHIMSGRRVFSVRLGKFRSSNTRQGVEKCEGESSASSSNLDARRCYSMGSFQYVVADSDLRVALCPNRGDVSSGSMRQLKVRVAQIGNNPSADSDFEGKNNIARKGESFSVSKIWLWSKKDKLPSSSVTHMGNSTNVTANLSWMNRTRGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01327 384 Pfam Ring finger domain 148 191 IPR001841 -
Accr10g01327 384 SMART ring_2 149 190 IPR001841 -
Accr10g01327 384 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Accr10g01327 384 FunFam RING-H2 finger protein ATL46 111 196 - -
Accr10g01327 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 349 - -
Accr10g01327 384 SUPERFAMILY RING/U-box 128 197 - -
Accr10g01327 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 196 IPR013083 -
Accr10g01327 384 CDD RING-H2_EL5-like 148 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01327 Accr-Chr10 36346360 36347514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01327 46 362 C3H Transcription Factor Family AT2G18650 40.290 2.72e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01327 - - gmx:100818135 473.396