Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01301 ATGCCGACGGATAGATCAAAATCGGAGAAGCGCGACGCTGCGACGCAGCTCCGACGGGATCCCTATGAGGTTCTAGGCCTCTTCCGGAACTCAACAGATCAAGAAATTAAAACTGCTTACCGGAAATTGGCACTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCGGATATGTTCAAGGAGGCCACCTTTTCATATAACATCTTGTCAGATCCTGAAAAGCGCCATCAGTACGACTCTAATGGTTTTGAGGGTGTTGAATCAGATAACCAAGACTTAGAAATGGATCTTTCAGGTTTAGGTGCTGTGAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCTATTAAGACAACTGTATCAGCAACTGTTTTGGAGGAGGCACTTAAAGGGGCAGTGATCATTCATCCAATTCCATTGGGGATGCCTATATCTAAAAGGGTTGAGAAGCAATGTGCTCACTTTTATTCAGTTACATTATCAGAAGAAGAAGCGCAGGATGGATTTGTTTGCCGTGTACAATCATCAGACAAAAGCAAGTTCAAGTTACTATATTTTGATCAAGAAGAGACTGTTGGACTAAGCCTTGCGCTCCAGGAAGACAGTGCAAAAACAGGGAAGGTAACTTCTGCGGGAATGTATTTTCTTGGGTTTCCTGTCTATCAATTGGATCAAACCATAACTTCAACAGCTGCTGTTAAGGATGCTGATGCATCATTTTTCAGAAAGCTAGATGGGTTCCGACCATGTGAATTAACAGAACTCAAGGCTGGAACTCATGTATTTGCCGTTTATGGCGACAATTTTTTCAGAAGTGCAAGCTACACTATAGAAGCTTCATGTGCTGCGTCTTTTAGTCAAGCGAAAGAAAATCTCAGAAGTGTAGAAGCCCAAATTTTAACAAAAAGGGCAGGCCTAACAAAGTTTGAGTCTGAATACCGAGAGGTTCTGGCACAATTTACAGAGATGACAAGTAGATATACACAAGAAATGCAAGCGATTGATGAGCTACTTAAGCAGAGGAATGAAATACGTGCATCATATACTGTTGCTCCATTAAAACGAAGTAGAACAAAGAGGAGTAAAAGTTCTTGCGAGAAGGAAGGAGAAGATGGCCAAGCAAGAGAGAAGGGACATACAAGGGAGCGATTGAGGAAGAAGAAATGGTTTAACATCCACTTAAAAGCTGATAAGAGAAAAGCTTGCTAG 1224 0.415 MPTDRSKSEKRDAATQLRRDPYEVLGLFRNSTDQEIKTAYRKLALKYHPDKNANDPKAADMFKEATFSYNILSDPEKRHQYDSNGFEGVESDNQDLEMDLSGLGAVNTMFAALFSKLGVPIKTTVSATVLEEALKGAVIIHPIPLGMPISKRVEKQCAHFYSVTLSEEEAQDGFVCRVQSSDKSKFKLLYFDQEETVGLSLALQEDSAKTGKVTSAGMYFLGFPVYQLDQTITSTAAVKDADASFFRKLDGFRPCELTELKAGTHVFAVYGDNFFRSASYTIEASCAASFSQAKENLRSVEAQILTKRAGLTKFESEYREVLAQFTEMTSRYTQEMQAIDELLKQRNEIRASYTVAPLKRSRTKRSKSSCEKEGEDGQAREKGHTRERLRKKKWFNIHLKADKRKAC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01301 407 SMART dnaj_3 19 77 IPR001623 -
Accr10g01301 407 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Accr10g01301 407 CDD DnaJ 20 74 IPR001623 -
Accr10g01301 407 Gene3D DnaJ domain 4 102 IPR036869 -
Accr10g01301 407 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Accr10g01301 407 PRINTS DnaJ domain signature 77 96 IPR001623 -
Accr10g01301 407 PRINTS DnaJ domain signature 40 55 IPR001623 -
Accr10g01301 407 PRINTS DnaJ domain signature 22 40 IPR001623 -
Accr10g01301 407 PRINTS DnaJ domain signature 57 77 IPR001623 -
Accr10g01301 407 MobiDBLite consensus disorder prediction 364 384 - -
Accr10g01301 407 Pfam DnaJ domain 20 82 IPR001623 -
Accr10g01301 407 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 406 - -
Accr10g01301 407 SUPERFAMILY Chaperone J-domain 19 94 IPR036869 -
Accr10g01301 407 FunFam Chaperone protein dnaJ 16 4 102 - -
Accr10g01301 407 MobiDBLite consensus disorder prediction 358 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01301 Accr-Chr10 35929956 35932811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01301 18 84 C2H2 Transcription Factor Family AT1G74250 41.667 2.69e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01301 - - gmx:100800929 645.966