Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01300 ATGCCGACGGATAGATCAAAATCGGAGAAGCGCGACGCTGCGACGCAGCTCCGACGGGATCCCTATGAGGTTCTAGGCCTCTTCCGGAACTCAACAGATCAAGAAATTAAAACTGCTTACCGGAAATTGGCACTCAAATATCATCCTGACAAGAATGCTAATGATCCTAAAGCAGCGGATATGTTCAAGGAGGCCACCTTTTCATATAACATCTTGTCAGATCCTGAAAAGCGCCATCAGTACGACTCTAATGGTTTTGAGGGTGTTGAATCAGATAACCAAGACTTAGAAATGGATCTTTCAGGTTTAGGTGCTGTGAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCTATTAAGACAACTGTATCAGCAACTGTTTTGGAGGAGGCACTTAAAGGGGCAGTGATCATTCATCCAATTCCATTGGGGATGCCTATATCTAAAAGGGTTGAGAAGCAATGTGCTCACTTTTATTCAGTTACATTATCAGAAGAAGAAGCGCAGGATGGATTTGTTTGCCGTGTACAATCATCAGACAAAAGCAAGTTCAAGGTTAGGGATTTTTGTCTCTATATAATCATCTCTGTTAAGATTACATGCCAGTTACTATATTTTGATCAAGAAGAGACTGTTGGACTAAGCCTTGCGCTCCAGGAAGACAGTGCAAAAACAGGGAAGGTAACTTCTGCGGGAATGTATTTTCTTGGGTTTCCTGTCTATCAATTGGATCAAACCATAACTTCAACAGCTGCTGTTAAGGATGCTGATGCATCATTTTTCAGAAAGCTAGATGGGTTCCGACCATGTGAATTAACAGAACTCAAGGCTGGAACTCATGTATTTGCCGTTTATGGCGACAATTTTTTCAGAAGTGCAAGCTACACTATAGAAGCTTCATGTGCTGCGTCTTTTAGTCAAGCGAAAGAAAATCTCAGAAGTGTAGAAGCCCAAATTTTAACAAAAAGGGCAGGCCTAACAAAGTTTGAGTCTGAATACCGAGAGGTTCTGGCACAATTTACAGAGATGACAAGTAGATATACACAAGAAATGCAAGCGATTGATGAGCTACTTAAGCAGAGGAATGAAATACGTGCATCATATACTGTTGCTCCATTAAAACGAAGTAGAACAAAGAGGAGTAAAAGTTCTTGCGAGAAGGAAGGAGAAGATGGCCAAGCAAGAGAGAAGGGACATACAAGGGAGCGATTGAGGAAGAAGAAATGGTTTAACATCCACTTAAAAGCTGATAAGAGAAAAGCTTGCTAG 1275 0.4118 MPTDRSKSEKRDAATQLRRDPYEVLGLFRNSTDQEIKTAYRKLALKYHPDKNANDPKAADMFKEATFSYNILSDPEKRHQYDSNGFEGVESDNQDLEMDLSGLGAVNTMFAALFSKLGVPIKTTVSATVLEEALKGAVIIHPIPLGMPISKRVEKQCAHFYSVTLSEEEAQDGFVCRVQSSDKSKFKVRDFCLYIIISVKITCQLLYFDQEETVGLSLALQEDSAKTGKVTSAGMYFLGFPVYQLDQTITSTAAVKDADASFFRKLDGFRPCELTELKAGTHVFAVYGDNFFRSASYTIEASCAASFSQAKENLRSVEAQILTKRAGLTKFESEYREVLAQFTEMTSRYTQEMQAIDELLKQRNEIRASYTVAPLKRSRTKRSKSSCEKEGEDGQAREKGHTRERLRKKKWFNIHLKADKRKAC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01300 424 SMART dnaj_3 19 77 IPR001623 -
Accr10g01300 424 MobiDBLite consensus disorder prediction 381 401 - -
Accr10g01300 424 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Accr10g01300 424 CDD DnaJ 20 74 IPR001623 -
Accr10g01300 424 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Accr10g01300 424 SUPERFAMILY Chaperone J-domain 19 94 IPR036869 -
Accr10g01300 424 MobiDBLite consensus disorder prediction 375 406 - -
Accr10g01300 424 FunFam Chaperone protein dnaJ 16 4 102 - -
Accr10g01300 424 PRINTS DnaJ domain signature 40 55 IPR001623 -
Accr10g01300 424 PRINTS DnaJ domain signature 77 96 IPR001623 -
Accr10g01300 424 PRINTS DnaJ domain signature 22 40 IPR001623 -
Accr10g01300 424 PRINTS DnaJ domain signature 57 77 IPR001623 -
Accr10g01300 424 Pfam DnaJ domain 20 82 IPR001623 -
Accr10g01300 424 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 191 - -
Accr10g01300 424 Gene3D DnaJ domain 4 102 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01300 Accr-Chr10 35929956 35932811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01300 18 84 C2H2 Transcription Factor Family AT1G74250 41.667 3.82e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01300 - - gmx:100800929 635.18