Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01287 ATGAAGAGGTCCAGAGACGATGGTTATATGAGCTCTCAACTTAAACGGCCCATGGTGTCTTCCCGAGGAGAAACATCGGGGCAGCCCCAGGTAATGGCTGGAAGTGCTCAAAAACTCACAACAAATGACGCCTTAGCATACCTCAAGGCAGTAAAGGAAATCTTTCAAGATAAAAGGGAGAAATATGATGATTTTTTAGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCCAAGGGGTATGAAATCACACTTCCTTTGGATGATGAACAACCTGTGCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTAAACAAAATTAAGTCTCGCTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTAGACATATTGAACATGTACAGAAAGGAGAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCCTCACTTTTCCATGACCACCCAGATCTTCTTGATGAGTTTACACATTTTCTTCCTGATACTTCAGCAACAGCATCTACACATCATGCTGCTTCTCGGAACTCTATGCTTAGGAGCTCTGCACTGCCGAGGCAAATGAGTGTTGAAAAGAGAGAAAGGACTGTGGATTCTCACGGTGATCGTGACCTTAGTGTTGATCGTTCTGATCCAGATCATGACAGAGTTATGATTAAGGCAGAAAAGGAGCAGAGGAAGCGTGCTGAGAAGGAAAAGGACCTCAAAGAAGAGAGGGATAGGGGAGATCGGGAACGGGATGATAGAAATTATGAGCCTGATGGTAGCCTTCCGCCCAAATGGAAATCTGGTCAGAGGACAGATGATCCTGGTGCCGAACCATTGCATCAAGGTGGTGATTCTGATGAAAATTTGAGCATGCGCCCTATGCCATCCACCCATGATGACAAAAGTTCAGTGAAGAGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAAGTCAAGGAGAAATTACGAAATCCTGAAGTTTATCAGGAATTTTTGAAGTGCCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAATCCTTGGTGGGTGATTTACTGGGAAAATATCCAGACCTTATGGAAGGGTTTAATGACTTTTTGTCCAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTAATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCATCTAAACCAGCAAAGGTTGAGGACAAGGATAGAGATAGACCTCAAGATCATGATAGGGATGATTGGATTAAAGAAAGAGATCGCGAACTCCGAGAAAGGGACAAATCTTCTGCTTTTATTAGCAAGGATGTTTCAGGTCCTAAGATGTATCCATATTCCAGCAAGGATAAGTATTACATGAAACCTATAAATGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTACCGTTACCTACCAAAAAATTATCCGATACCCATGGTTAGCCAGAGAACTGAGCTTGGTGCTGAAGTAGTGAATGATCATTGGGTTTCTGTAACTTCTGGAAGTGAGGATTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCCTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACGACAAAGCGAGTGGAAGAGCTCCTAGAAAAGATCAATAATAATACTATTAAATCAGATAGCCCTATTCGTCTTGAGGATCACTTGACAGCTCTAAATCGAAGGTGCATTGAACGATTATATGGTGATCATGCTCTTGATGTGATGGAGGTGTTGAGAAAGAATGCACCTCTAGCTTTACCTGTTATATTAAGCCGTTTGAAGCAGAAACAAGAAGAGTGGGCTAGGTGCCGTGCAGATTTTAATAAAGTTTGGGCTGAAATATATGCTAAGAATTATCACAAATCGCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCCTTAGTGGCCGAAATAAAAGAGATCAGTGAGAAGAAACACAAAGAAGATGACGTTCTTCTTGCAATTGCCGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATATGAGTATTCCGACCCAGCTATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCAATGCTCGGTGTTCCTTCTCGACCCCAGGGTGCTGAGGATACAGAAGATGTCGTCAAGGCTAAGCATAGTTCTGCCAAAGGTGGCACTGCAAGTTTTGGTGGCAGTGATGGTAGTCCTGGTGTAGTTGCAAATGTAATGAATTCAAGACAATTAAATACATCTGGAAATGGGGATGAAAGTATTTCATTAGAACAGTCAAATTCCAAGACTGAAACTTTGGATCATATTAAACATCATGAGGGAACCCATATAAATTCATCCATGCCTGATGAGATATTAGCGGCCAACAGACAAGGTCATTCCACTGAACAGTTGGTGAATGCTAATGCCTTAATGACTTCTGGAATGGAACAAAGTAATGGGAGAACAAACATAGAGAATGCATCAGGGCTTACTGCTACTACATTAAGACCTGGTAATGCTGCTGCTGAGGGAGGCCATTTTCCTTCATCAGAGGTTGGCGATTCTACAAGGCCAGCTACTCCTGTAAATGGGGCCATCACAGAAAGCAACAAAGTTCACAGGTACCAAGAAGAACCTGCTGGGCACTTCAAAAATGAAAGAGAAGAGGGTGAACTATCTCCCAATGGAGATTTTGAGGATAACTTTGCGGCATATGGAGATGCTGGTTTAGCAGCAGTAGGGCATAAAGGAAAGAATGGTAGTGTGAGTTTGCAATACCAAAATAGACGTGAAGAAGGGTGTGGTGAGGCAGCAGGAGAAAATGATGCTGATGTTGATGAAGGTGAAAGAAGTCCTCATAGGTCATCACAGGACAGTGAGAATGCTTCTGAAAATGGTCATGTTTCGGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTATCAAGAAGAGCATGATGAGGATGAGGAACATGATGACAAGGTTGAGAGTGAGGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTGGAAGGAGATGGAATCTCATTGCCATTTTCGGAACGCTTTTTGCTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTACGTTGCATGAGAAAGAAAGGATTTCTAGAGTTTTTTATGGAAATGATTCCTTTTATGTGCTTTTTAGGCTTCACCAAACATTGTATAAGAGGATACAGTCAGCAAAGTTGAACTCATCATCTGCAGATAGGAAGTGGAGGGCTTCAAATGATGTAAACTCGAACGATCAATATGGCAGATTCATGACAGCCCTTTATAACCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATTTGTGTTATTTACATTTGACAAGTTGATATATAAGCTTGTTAAACAGCTGCAAGCCGTTGCTACTGATGATATGGATAACAAGCTTCTCCAACTTCATTCATACGAGAAATCTAGAAAATCTGGAAGATTTTTTGATATGGTTTATTATGAAAATGCTCGAGTACTTCTTCATGATGAAATGATATACCGTATTGAATGTTCATCTACACCAACACGATTATCTATTCAGTTGATGGACTATGGACATGATAAACCCGAAGCAACTGCTGTGTCTATGGACCCTAACTTTTCAGCCTATTTGCACAAGGACTTCCTTTCTGTTTTTCCTGAGAAAAAGAAGTCGGGAATTTTCCTGAAGAGGAATAAACGCAAATATGCCTGTGGTGATGAACTTTCAAGCCAGGCCATGGAAGGATTACAGGTCATCAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATATGTTTTAGATACAGAAGACTTTTTATTTCGAATAAGAAGGAAGAGGAAAGCTTTGCATCAGAACAGACTGTGTCCTCAACAGACAAATTCTAAAAACATTTGTACAAGGAGAGCTCAGCGGTACCAGAGATTGTTTTCCATCACGTGA 4188 0.4088 MKRSRDDGYMSSQLKRPMVSSRGETSGQPQVMAGSAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLDDEQPVQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSATASTHHAASRNSMLRSSALPRQMSVEKRERTVDSHGDRDLSVDRSDPDHDRVMIKAEKEQRKRAEKEKDLKEERDRGDRERDDRNYEPDGSLPPKWKSGQRTDDPGAEPLHQGGDSDENLSMRPMPSTHDDKSSVKSMYSQEFAFCEKVKEKLRNPEVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFNDFLSRCEKNDGFLAGVMNKKSFWNEGIASKPAKVEDKDRDRPQDHDRDDWIKERDRELRERDKSSAFISKDVSGPKMYPYSSKDKYYMKPINELDLSNCEQCTPSYRYLPKNYPIPMVSQRTELGAEVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKSDSPIRLEDHLTALNRRCIERLYGDHALDVMEVLRKNAPLALPVILSRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALVAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEYEYSDPAIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHSSAKGGTASFGGSDGSPGVVANVMNSRQLNTSGNGDESISLEQSNSKTETLDHIKHHEGTHINSSMPDEILAANRQGHSTEQLVNANALMTSGMEQSNGRTNIENASGLTATTLRPGNAAAEGGHFPSSEVGDSTRPATPVNGAITESNKVHRYQEEPAGHFKNEREEGELSPNGDFEDNFAAYGDAGLAAVGHKGKNGSVSLQYQNRREEGCGEAAGENDADVDEGERSPHRSSQDSENASENGHVSGSESADGEECYQEEHDEDEEHDDKVESEGEAEGMADANDVEGDGISLPFSERFLLSVKPLAKHVPPTLHEKERISRVFYGNDSFYVLFRLHQTLYKRIQSAKLNSSSADRKWRASNDVNSNDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSFVLFTFDKLIYKLVKQLQAVATDDMDNKLLQLHSYEKSRKSGRFFDMVYYENARVLLHDEMIYRIECSSTPTRLSIQLMDYGHDKPEATAVSMDPNFSAYLHKDFLSVFPEKKKSGIFLKRNKRKYACGDELSSQAMEGLQVINGLECKIACSSSKVSYVLDTEDFLFRIRRKRKALHQNRLCPQQTNSKNICTRRAQRYQRLFSIT 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01287 1395 MobiDBLite consensus disorder prediction 1039 1058 - -
Accr10g01287 1395 Pfam C-terminal domain of Sin3a protein 1110 1355 IPR031693 -
Accr10g01287 1395 Coils Coil 564 584 - -
Accr10g01287 1395 Coils Coil 249 271 - -
Accr10g01287 1395 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Accr10g01287 1395 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Accr10g01287 1395 Pfam Paired amphipathic helix repeat 352 396 IPR003822 GO:0006355
Accr10g01287 1395 FunFam Paired amphipathic helix protein SIN3 328 401 - -
Accr10g01287 1395 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Accr10g01287 1395 SUPERFAMILY PAH2 domain 330 397 IPR036600 GO:0006355
Accr10g01287 1395 MobiDBLite consensus disorder prediction 14 33 - -
Accr10g01287 1395 SMART hdac_interact2seq4b 491 591 IPR013194 -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 217 285 - -
Accr10g01287 1395 ProSiteProfiles PAH domain profile. 330 399 IPR003822 GO:0006355
Accr10g01287 1395 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Accr10g01287 1395 Gene3D Paired amphipathic helix 328 401 IPR036600 GO:0006355
Accr10g01287 1395 MobiDBLite consensus disorder prediction 1 33 - -
Accr10g01287 1395 Pfam Sin3 family co-repressor 493 585 IPR013194 -
Accr10g01287 1395 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 901 938 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 812 831 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 426 449 - -
Accr10g01287 1395 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Accr10g01287 1395 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Accr10g01287 1395 MobiDBLite consensus disorder prediction 197 329 - -
Accr10g01287 1395 PANTHER SIN3B-RELATED 37 1254 IPR039774 GO:0003714
Accr10g01287 1395 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 197 214 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 944 963 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 993 1074 - -
Accr10g01287 1395 MobiDBLite consensus disorder prediction 916 933 - -
Accr10g01287 1395 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Accr10g01287 1395 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01287 Accr-Chr10 35589296 35598391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01287 33 120 WRKY Transcription Factor Family AT4G12020 60.227 4.33e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr10g01287 Sin3a_C 2e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01287 K11644 - zju:107428768 1998.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g01368 9 19419728 19430811 Accr10g01287 10 35589296 35598391 CCT
Accr10g01287 10 35589296 35598391 Accr10g01287 10 35589296 35598391 ECH