Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01270 ATGGATCCGGCGGCTATCAAAACGATGAACGAGGGTTCGTTTGCGAATGGGAACACCAATACGGCGTCGTATAACTTGGGGGAGATCTGGCAGTTCCCGATGAACGGCGGTGCGGGTCTCGGGGAGTCCGGAGGCGGGTTGGGCTTGAGGAGGCCGCAGTTTGGACAAAATTTCGGGCAGTTTGGCCATTTTACTTCGGGTCCGAACCCGAATGCCCCGGGTAATGATCCGAACTGTTCGGAGCAGGGAACGAATGGTGTTCATAAGAAGCGCGATTCCGAGGATGAATTGGCGAAAGGCGTCTCCACCACCAGCAACGGTGGCATTGGCCGTAGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAATTATCAGGGAATAGGAATGAGGGCCACGAATCCAAAGCTGAAACAGAAACCAGTTCGGAGAAGCCAGAGGAGCAAAGTACTGAGCCAGCTTCTGAGCCTCCTAAGCCAGCTTACATCCATGTACGGGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTAGCGGAAAGAGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGAGTTGGTTCCTGGTTGTAACAAGGTTATTGGGAAAGCCTTGGTCCTCGATGAGATAATAAATTACATTCAGTCACTACAGCATCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCTGTAAATTCAAGAGCTGACCCTGGCATTGAAATTTTTCCTCCTAAAGATTTTGGTCAACAAACATTTGACATGGTAATTGGTTCTCAAGCTCCGAGAGATCAGTTCAGCCGGGGTTCATCACCGGAATGGTTACACATGCAGGTAGGAGGAGGTAGATTTGAAAGAACAACATGA 876 0.4909 MDPAAIKTMNEGSFANGNTNTASYNLGEIWQFPMNGGAGLGESGGGLGLRRPQFGQNFGQFGHFTSGPNPNAPGNDPNCSEQGTNGVHKKRDSEDELAKGVSTTSNGGIGRSNGVNDGDGKRLKLSGNRNEGHESKAETETSSEKPEEQSTEPASEPPKPAYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRADPGIEIFPPKDFGQQTFDMVIGSQAPRDQFSRGSSPEWLHMQVGGGRFERTT 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01270 291 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 83 259 IPR024097 GO:0006355
Accr10g01270 291 MobiDBLite consensus disorder prediction 122 152 - -
Accr10g01270 291 CDD bHLH_AtBPE_like 162 246 - -
Accr10g01270 291 SMART finulus 177 227 IPR011598 GO:0046983
Accr10g01270 291 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Accr10g01270 291 Coils Coil 218 238 - -
Accr10g01270 291 Gene3D - 168 241 IPR036638 GO:0046983
Accr10g01270 291 MobiDBLite consensus disorder prediction 58 84 - -
Accr10g01270 291 MobiDBLite consensus disorder prediction 57 159 - -
Accr10g01270 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Accr10g01270 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 238 IPR036638 GO:0046983
Accr10g01270 291 FunFam Basic helix-loop-helix transcription factor 168 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01270 Accr-Chr10 35382904 35384998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01270 1 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.060 5.19e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g01270 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01270 - - qsa:O6P43_025379 361.688