Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01225 ATGAGCCGCAAGCGAGAGAAACCCTACTTTTCCCGCCATGCTCCCTACTCTCAGTCTGTGCCCAAGAGGCGTCGACCTCTTCCCGTTCCTGATCCGGAACCCGCTGCCGACGAGCACGCAACAAGGAAGCCGCCGCCTTGTGCGGTGGTGGTTATGGGTCTCCCTTTAGACTGCTCTGTTCTCGATCTGAAATCCCGATTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGGAGTTGGCTACATTACCTATCGGATTAAGGAATACGCCGATGCCGCCATAGCTGCTGCACTTGACCCATCTTTCGGCATCACCATCAGTTCGAAAAGGGTTCAGGTATTGTGGGCAACTGATCCTCTGGCCATGTGGAGGGAAGGAGTAGGTAACAGTAACAAGGATAAAGGGTCCAGGTCAAAACTTGTGCGTGCTGAGATACCTTTAAGCAGACATGGAAGAGGTAATAAACTCGCCTCAGCTATAGTGAATCCCAAAAATAATGAGCCTAGCTCAAGTCGAGGCGTGCCTTTCCCGGCCAGAGAAATCGTCGTTTATGATGATATTCTGTAG 579 0.5268 MSRKREKPYFSRHAPYSQSVPKRRRPLPVPDPEPAADEHATRKPPPCAVVVMGLPLDCSVLDLKSRFEIYGAISRIRIDRDGVGYITYRIKEYADAAIAAALDPSFGITISSKRVQVLWATDPLAMWREGVGNSNKDKGSRSKLVRAEIPLSRHGRGNKLASAIVNPKNNEPSSSRGVPFPAREIVVYDDIL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01225 192 MobiDBLite consensus disorder prediction 1 42 - -
Accr10g01225 192 CDD RRM_SF 49 89 - -
Accr10g01225 192 PANTHER GEO13361P1-RELATED 40 160 - -
Accr10g01225 192 SUPERFAMILY RNA-binding domain, RBD 19 129 IPR035979 GO:0003676
Accr10g01225 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 100 IPR000504 GO:0003723
Accr10g01225 192 Gene3D - 31 160 IPR012677 -
Accr10g01225 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 122 IPR000504 GO:0003723
Accr10g01225 192 MobiDBLite consensus disorder prediction 26 40 - -
Accr10g01225 192 SMART rrm1_1 48 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01225 Accr-Chr10 34720121 34721004 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01225 1 192 Homeobox Transcription Factor Family AT1G27050 51.415 2.96e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01225 - - pcin:129311146 285.804