Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01224 ATGGCTGGTCCTAAGCTTTTTGCTCCCTCAAATCTCACAGCTTTTCTTCAAAACGAAAGCGTTCCCTGTTCTTCTCCTCCTCCTCCTCACGTTCTTGACTCTTTCTTGTTTCACCACTCTGATCTCTCCTTTCATGGTTCAAAACATCTGGTTGATTTTGAGAATGTTAGTGGAAGTACAATATCAGAATTGCCATTCTTCCAAGGACTGGACAAAGAAGAGAACAACACAGAAGAGGAATACGATGCGTACTTTCATCAAGCAGGGAAGAAGAGGAGGCTCACAGGCCAACAAGTTCAGTTCTTGGAGAAACACTTCGAGGTAGAAAACAAGCTCGAACCAGAAAGAAAAGTTCAACTCGCCAAAGAACTCGGATTGCAGCCAAGACAAGTCGCTATTTGGTTCCAGAACCGACGAGCCCGGTTCAAGACCAAACAACTCGAAAAAGATCATGCCGCCTTAAAATCTAGCTATGACAAACTCAAAGGTGAATATGACAATCTTCTTCAACAGAGCAACAAGTTAAAAGAAGAGGTGGACTCTCTGAAGAACAGGTTGAAAGGGAGAGATCAAAAAGAGAAAGAAGAGAATCGTGTTGATGTTTTGATCTCAGATAATAATGATGGGATTTCTGAAAATGGTTCAAAAGTTGAAAAGGTTCCTTCTACAGTGGTAATGTGCAAACAAGAAGATGCTAATTCTACTAAAAGTGATGTGTTTGATTCTGATAGCCCACACCACACTGCAGATTCGTCTCATGCCTACAACGAAGCAGAGCACTCAGATTTCTCACAGGATGAAGAAGACAACAACAACAACAACCACCTCTTGAGTCTCCCATGCTTATTACCCAAGGTTGAAGAAGAGCCCTGTAACTTTGGGTTCCCACCATATGAAGATCAACCCTTCTATTTTTGGTCTTATTAA 927 0.4175 MAGPKLFAPSNLTAFLQNESVPCSSPPPPHVLDSFLFHHSDLSFHGSKHLVDFENVSGSTISELPFFQGLDKEENNTEEEYDAYFHQAGKKRRLTGQQVQFLEKHFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDHAALKSSYDKLKGEYDNLLQQSNKLKEEVDSLKNRLKGRDQKEKEENRVDVLISDNNDGISENGSKVEKVPSTVVMCKQEDANSTKSDVFDSDSPHHTADSSHAYNEAEHSDFSQDEEDNNNNNHLLSLPCLLPKVEEEPCNFGFPPYEDQPFYFWSY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01224 308 Gene3D - 84 153 - -
Accr10g01224 308 SMART HOX_1 88 149 IPR001356 GO:0003677
Accr10g01224 308 MobiDBLite consensus disorder prediction 186 202 - -
Accr10g01224 308 MobiDBLite consensus disorder prediction 186 272 - -
Accr10g01224 308 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Accr10g01224 308 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Accr10g01224 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 246 IPR045224 GO:0003700
Accr10g01224 308 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
Accr10g01224 308 MobiDBLite consensus disorder prediction 204 218 - -
Accr10g01224 308 CDD homeodomain 90 146 IPR001356 GO:0003677
Accr10g01224 308 MobiDBLite consensus disorder prediction 234 269 - -
Accr10g01224 308 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Accr10g01224 308 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Accr10g01224 308 Coils Coil 144 192 - -
Accr10g01224 308 FunFam homeobox-leucine zipper protein ATHB-6-like 93 139 - -
Accr10g01224 308 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Accr10g01224 308 Pfam Homeodomain 90 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01224 Accr-Chr10 34691969 34693160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01224 90 255 Homeobox Transcription Factor Family AT3G01470 47.929 1.23e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr10g01224 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01224 - K09338 qsa:O6P43_025407 285.034