Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr10g01220 | ATGGAATCACAGTTGGGTCTGATAGACCAATCAATCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTGTCATCACCGACCCCTCTATCTCTGGCCACCCAATTGTTTTTGCAAGCCACGGGCTCTTGAAAATGTCAGGGTATTCCAAAGAAGAGGTGATTGGCAAGAATGGCAAGATTTTTCAAGGACCAGGGACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGATCTTTTCAGATCAATTTGTTGAATTATCGTAAAGATGGCAAGCCTTTTTGGATTTTGTTCCACATGAACCCTGTATTTAACAAGCATGATGGTAGGGTGAGTCACTTCGTGGCAGTTCAGGTACCTCTATCAAGGAAACGGAGGTGGTCGGCATGCGGCGTTAGGACAACTAACGTTAATTTGAGTGACGATGGGTCTATGGCTCAGGATTTTGTGTATGGATCGTGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTTGGTCGTGTTCTGTCTGTTCATCAAGTGTCAGAAGTAGAACATGATGAACCAAATAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGACAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTTATATGCCTATTGTGTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTTCTGGGACGCAACTGTAGATTTCTAAGTGGACTGAATACTGATACCTCAGCTTTATATTTGATTAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGATAGCATATTTTGTGGGGGTTCAAATAGAAGAAGGCTGTGAGAACAAGCAAGGCAGACAGGGTTTGAGCCCTGATAAGATTCAGCTGAGCGTGGTGGGAGCAGTGAGGATTGCTGTGAGGGGTTCATCATTGATTGCTGGATCTTCCAAGTCATACACAGTATAA | 1218 | 0.431 | MESQLGLIDQSIDSRYSCHVREALDELPDNFVITDPSISGHPIVFASHGLLKMSGYSKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERSFQINLLNYRKDGKPFWILFHMNPVFNKHDGRVSHFVAVQVPLSRKRRWSACGVRTTNVNLSDDGSMAQDFVYGSCRKEVCSDSLLELGRVLSVHQVSEVEHDEPNSEEPCEASDVDKRKAMTAMDNIFSVLTHYSELTGRLVCRKRCSISDVGLLSSSLIISLGRIKQSFVLTNPHLPYMPIVYASDAFLKLTGYVKDEVLGRNCRFLSGLNTDTSALYLIRESIKAEQPCTVRILNYRKDESPFWNFLHISPIRDASGKIAYFVGVQIEEGCENKQGRQGLSPDKIQLSVVGAVRIAVRGSSLIAGSSKSYTV | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr10g01220 | 405 | CDD | PAS | 273 | 358 | IPR000014 | - | |
| Accr10g01220 | 405 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 28 | 130 | IPR035965 | - | |
| Accr10g01220 | 405 | CDD | PAS | 27 | 129 | IPR000014 | - | |
| Accr10g01220 | 405 | SMART | pac_2 | 323 | 362 | IPR001610 | - | |
| Accr10g01220 | 405 | SMART | pac_2 | 93 | 136 | IPR001610 | - | |
| Accr10g01220 | 405 | NCBIfam | PAS domain S-box protein | 21 | 128 | IPR000014 | - | |
| Accr10g01220 | 405 | NCBIfam | PAS domain S-box protein | 273 | 358 | IPR000014 | - | |
| Accr10g01220 | 405 | FunFam | Protein TWIN LOV 1 isoform D | 30 | 224 | - | - | |
| Accr10g01220 | 405 | Gene3D | PAS domain | 17 | 141 | - | - | |
| Accr10g01220 | 405 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 270 | 359 | IPR035965 | - | |
| Accr10g01220 | 405 | Gene3D | PAS domain | 260 | 390 | - | - | |
| Accr10g01220 | 405 | Pfam | PAS domain | 260 | 359 | IPR000014 | - | |
| Accr10g01220 | 405 | Pfam | PAS domain | 40 | 131 | IPR000014 | - | |
| Accr10g01220 | 405 | PANTHER | PROTEIN TWIN LOV 1 | 4 | 392 | - | - | |
| Accr10g01220 | 405 | ProSiteProfiles | PAS repeat profile. | 16 | 65 | IPR000014 | - | |
| Accr10g01220 | 405 | ProSiteProfiles | PAS repeat profile. | 273 | 295 | IPR000014 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr10g01220 | Accr-Chr10 | 34609744 | 34613037 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr10g01220 | 246 | 374 | AGC Kinase Gene Family | AT5G58140 | 42.222 | 4.53e-29 | 117 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr10g01220 | - | - | mof:131144581 | 536.954 |