Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01219 ATGGAATCACAGTTGGGTCTGATAGACCAATCAATCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTGTCATCACCGACCCCTCTATCTCTGGCCACCCAATTGTTTTTGCAAGCCACGGGCTCTTGAAAATGTCAGGGTATTCCAAAGAAGAGGTGATTGGCAAGAATGGCAAGATTTTTCAAGGACCAGGGACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGATCTTTTCAGATCAATTTGTTGAATTATCGTAAAGATGGCAAGCCTTTTTGGATTTTGTTCCACATGAACCCTGTATTTAACAAGCATGATGGTAGGGTGAGTCACTTCGTGGCAGTTCAGGTACCTCTATCAAGGAAACGGAGGTGGTCGGCATGCGGCGTTAGGACAACTAACGTTAATTTGAGTGACGATGGGTCTATGGCTCAGGATTTTGTGTATGGATCGTGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTTGGTCGTGTTCTGTCTGTTCATCAAGTGTCAGAAGTAGAACATGATGGTAGAGAACCAAATAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGACAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTTATATGCCTATTGTGTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTTCTGGGACGCAACTGTAGATTTCTAAGTGGACTGAATACTGATACCTCAGCTTTATATTTGATTAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGATAGCATATTTTGTGGGGGTTCAAATAGAAGAAGGCTGTGAGAACAAGCAAGGCAGACAGGGTTTGAGCCCTGATAAGATTCAGCTGAGCGTGGTGGGAGCAGTGAGGATTGCTGTGAGGGGTTCATCATTGATTGCTGGATCTTCCAAGTCATACACAGTATAA 1224 0.4314 MESQLGLIDQSIDSRYSCHVREALDELPDNFVITDPSISGHPIVFASHGLLKMSGYSKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERSFQINLLNYRKDGKPFWILFHMNPVFNKHDGRVSHFVAVQVPLSRKRRWSACGVRTTNVNLSDDGSMAQDFVYGSCRKEVCSDSLLELGRVLSVHQVSEVEHDGREPNSEEPCEASDVDKRKAMTAMDNIFSVLTHYSELTGRLVCRKRCSISDVGLLSSSLIISLGRIKQSFVLTNPHLPYMPIVYASDAFLKLTGYVKDEVLGRNCRFLSGLNTDTSALYLIRESIKAEQPCTVRILNYRKDESPFWNFLHISPIRDASGKIAYFVGVQIEEGCENKQGRQGLSPDKIQLSVVGAVRIAVRGSSLIAGSSKSYTV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01219 407 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Accr10g01219 407 CDD PAS 27 129 IPR000014 -
Accr10g01219 407 Pfam PAS domain 262 361 IPR000014 -
Accr10g01219 407 Pfam PAS domain 40 131 IPR000014 -
Accr10g01219 407 Gene3D PAS domain 17 141 - -
Accr10g01219 407 Gene3D PAS domain 262 392 - -
Accr10g01219 407 ProSiteProfiles PAS repeat profile. 275 297 IPR000014 -
Accr10g01219 407 MobiDBLite consensus disorder prediction 189 208 - -
Accr10g01219 407 FunFam Protein TWIN LOV 1 isoform D 30 226 - -
Accr10g01219 407 CDD PAS 275 360 IPR000014 -
Accr10g01219 407 SUPERFAMILY PYP-like sensor domain (PAS domain) 272 361 IPR035965 -
Accr10g01219 407 SMART pac_2 93 136 IPR001610 -
Accr10g01219 407 SMART pac_2 325 364 IPR001610 -
Accr10g01219 407 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Accr10g01219 407 NCBIfam PAS domain S-box protein 275 360 IPR000014 -
Accr10g01219 407 NCBIfam PAS domain S-box protein 21 128 IPR000014 -
Accr10g01219 407 PANTHER PROTEIN TWIN LOV 1 4 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01219 Accr-Chr10 34609744 34613037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01219 248 376 AGC Kinase Gene Family AT5G58140 42.222 4.96e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01219 - - jre:108989811 536.184