LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01219	ATGGAATCACAGTTGGGTCTGATAGACCAATCAATCGACAGTCGTTACTCCTGCCATGTTCGCGAGGCGCTCGACGAATTGCCTGACAATTTTGTCATCACCGACCCCTCTATCTCTGGCCACCCAATTGTTTTTGCAAGCCACGGGCTCTTGAAAATGTCAGGGTATTCCAAAGAAGAGGTGATTGGCAAGAATGGCAAGATTTTTCAAGGACCAGGGACTTGTAGAAGATCGGTAATAGAAATTCGTGAGGCGATAAGAGAAGAGAGATCTTTTCAGATCAATTTGTTGAATTATCGTAAAGATGGCAAGCCTTTTTGGATTTTGTTCCACATGAACCCTGTATTTAACAAGCATGATGGTAGGGTGAGTCACTTCGTGGCAGTTCAGGTACCTCTATCAAGGAAACGGAGGTGGTCGGCATGCGGCGTTAGGACAACTAACGTTAATTTGAGTGACGATGGGTCTATGGCTCAGGATTTTGTGTATGGATCGTGTCGGAAGGAAGTGTGCTCGGATTCTTTGTTGGAACTTGGTCGTGTTCTGTCTGTTCATCAAGTGTCAGAAGTAGAACATGATGGTAGAGAACCAAATAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGACAAGAGAAAAGCTATGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGTGAGTTGACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCATTTACCTTATATGCCTATTGTGTATGCCAGTGATGCCTTCTTGAAATTGACAGGTTACGTAAAAGATGAAGTTCTGGGACGCAACTGTAGATTTCTAAGTGGACTGAATACTGATACCTCAGCTTTATATTTGATTAGGGAGAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCCCATTTTGGAATTTTCTACACATATCACCTATTCGTGATGCCTCTGGCAAGATAGCATATTTTGTGGGGGTTCAAATAGAAGAAGGCTGTGAGAACAAGCAAGGCAGACAGGGTTTGAGCCCTGATAAGATTCAGCTGAGCGTGGTGGGAGCAGTGAGGATTGCTGTGAGGGGTTCATCATTGATTGCTGGATCTTCCAAGTCATACACAGTATAA	1224	0.4314	MESQLGLIDQSIDSRYSCHVREALDELPDNFVITDPSISGHPIVFASHGLLKMSGYSKEEVIGKNGKIFQGPGTCRRSVIEIREAIREERSFQINLLNYRKDGKPFWILFHMNPVFNKHDGRVSHFVAVQVPLSRKRRWSACGVRTTNVNLSDDGSMAQDFVYGSCRKEVCSDSLLELGRVLSVHQVSEVEHDGREPNSEEPCEASDVDKRKAMTAMDNIFSVLTHYSELTGRLVCRKRCSISDVGLLSSSLIISLGRIKQSFVLTNPHLPYMPIVYASDAFLKLTGYVKDEVLGRNCRFLSGLNTDTSALYLIRESIKAEQPCTVRILNYRKDESPFWNFLHISPIRDASGKIAYFVGVQIEEGCENKQGRQGLSPDKIQLSVVGAVRIAVRGSSLIAGSSKSYTV	407

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01219	407	SUPERFAMILY	PYP-like sensor domain (PAS domain)	28	130	IPR035965	-
	Accr10g01219	407	CDD	PAS	27	129	IPR000014	-
	Accr10g01219	407	Pfam	PAS domain	262	361	IPR000014	-
	Accr10g01219	407	Pfam	PAS domain	40	131	IPR000014	-
	Accr10g01219	407	Gene3D	PAS domain	17	141	-	-
	Accr10g01219	407	Gene3D	PAS domain	262	392	-	-
	Accr10g01219	407	ProSiteProfiles	PAS repeat profile.	275	297	IPR000014	-
	Accr10g01219	407	MobiDBLite	consensus disorder prediction	189	208	-	-
	Accr10g01219	407	FunFam	Protein TWIN LOV 1 isoform D	30	226	-	-
	Accr10g01219	407	CDD	PAS	275	360	IPR000014	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01219	Accr-Chr10	34609744	34613037	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01219	248	376	AGC Kinase Gene Family	AT5G58140	42.222	4.96e-29	117

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01219	-		-	jre:108989811	536.184

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