Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01217 ATGGGGTTGGGTGCTGATAATGGTAAGGTGGAGTCTTGGGATGTCAGCAAATCAAAGGGGAAGAAGAAGAATAAGAAAGATGATGGCGTTGTGGAAGAGGAAGAAACTGGGTGTTGGTTTAGTCTGAGGTTCATTGGCAGTTGCATTTCTTCGAGATCCAAGGTTGATAGCTCAGTCAGCAGCATCAGCACTCATTACGCTGAAAGTAAATCAACTATCGGTACAAGTAGAGATCAACCAACTGCTCCAGTAGTCTCTTCTACAACCACAAGTAACGCTGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTGCCTCCAGGCTGCGAAAGTTCTCTTTTAATGATCTTAAGCTGGCAACAAGAAACTTCCGGCCTGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTATTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTGAATCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAGTTTTCTTGGTGATCTAATTCATCCAAACCTCGTTAAACTCATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTAGTTTATGAATTTATGCCTCGAGGAAGCCTGGAGAACCACCTTTTTAGGAGATCCCTGCCGCTTCCATGGTCCATTAGAATGAAAATTGCACTTGGGGCTGCAAAAGGTCTTGCTTTTCTTCATGAGGAAGCCGAACGACCTGTAATATATAGGGATTTTAAAACTTCTAATATACTATTGGATGCTGAGTACAATACCAAGCTTTCAGATTTTGGACTTGCCAAAGATGGTCCGGAGGGTGATAAAACCCATGTATCAACCCGGGTGATGGGAACTTATGGTTATGCAGCACCAGAGTATGTCATGACAGGTCATCTGACATCAAAAAGCGATGTGTACAGTTTTGGAGTAGTTCTTCTTGAGATGTTGACTGGCAGAAGATCTATGGACAAAAACCGACCCAATGGTGAACATAACCTTGTTGAATGGGCTCGGCCACATCTTGGAGAGAGAAGAAGGTTCTATAGGTTGATAGATCCTCGGTTAGAAGGTCACTTTTCTATAAAAGGAGCTCAAAAGGCTGCCCAACTGGCTGCTCACTGCCTCAGCAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTCGTAGAAGCACTAAAGCCTCTGCCAAAGCTTAAGGACATGGCAAGCTCATCATATTATTTTCAGACAATGCAAGCCGACCGATTCAGTGCCAGCCCTAATACTCGAAACGGGCGAACGCTGCTTAGCCGGAATGGGCAGCAGCAGAGGAGCCTTTCTATACCACATGGATCTCATGCATCTCCTTATCACCACCAGTTTCCCCTACAATCCCCTAAACCTAATGGCAAAGCATAG 1443 0.4484 MGLGADNGKVESWDVSKSKGKKKNKKDDGVVEEEETGCWFSLRFIGSCISSRSKVDSSVSSISTHYAESKSTIGTSRDQPTAPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVSFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNTKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPKLKDMASSSYYFQTMQADRFSASPNTRNGRTLLSRNGQQQRSLSIPHGSHASPYHHQFPLQSPKPNGKA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01217 480 FunFam Probable serine/threonine-protein kinase PBL8 213 428 - -
Accr10g01217 480 Pfam Protein tyrosine and serine/threonine kinase 131 407 IPR001245 GO:0004672|GO:0006468
Accr10g01217 480 MobiDBLite consensus disorder prediction 68 100 - -
Accr10g01217 480 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
Accr10g01217 480 MobiDBLite consensus disorder prediction 432 480 - -
Accr10g01217 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Accr10g01217 480 MobiDBLite consensus disorder prediction 432 458 - -
Accr10g01217 480 ProSiteProfiles Protein kinase domain profile. 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g01217 480 MobiDBLite consensus disorder prediction 1 31 - -
Accr10g01217 480 PANTHER OS01G0588500 PROTEIN-RELATED 91 410 - -
Accr10g01217 480 MobiDBLite consensus disorder prediction 12 31 - -
Accr10g01217 480 FunFam Serine/threonine-protein kinase BIK1 94 212 - -
Accr10g01217 480 MobiDBLite consensus disorder prediction 68 99 - -
Accr10g01217 480 Gene3D Transferase(Phosphotransferase) domain 1 213 429 - -
Accr10g01217 480 Gene3D Phosphorylase Kinase; domain 1 86 212 - -
Accr10g01217 480 SUPERFAMILY Protein kinase-like (PK-like) 113 432 IPR011009 -
Accr10g01217 480 CDD STKc_IRAK 133 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01217 Accr-Chr10 34564644 34568749 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01217 96 407 Glycoside Hydrolase AT3G07070 56.467 3.33e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr10g01217 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01217 - - gmx:100807510 847.425