Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01208 ATGAACAGAAATATTACCTTATTTTCATTCTTTTTATTAATCTGTTGGGTAGCCATTCCTACCCTCCATGCAAATGTGTTAGAGAATGAAACTTTTTGGAACGAGCATTCAATTGAATTTGATCAGTATTGGCATCAAAGAGCCAACGAAGCTGAAAAGGCCAACAAGGAAGAATATCAATCTAACCCCTATGAAGTCGTAGGCAACATCACCGCTAGTGTTGAGAGAATGCTGCTTAGCACAGGGCGTGAAGGAAGGAGCTTGCGACAACGTGGTCCTCACAAAGGTCCGTGCATGGCCACCAACCCAATTGACAGGTGCTGGAGATGCGATCCCAACTGGGAGCGAAACAGACAGAAGTTGGCTGATTGTGTTCTAGGATTTGGCAAAGGCACAACCGGTGGAAAGGGTGGTCCATACTATGTGGTAACAGATCCCTCGGATAATGACTTGGTTAACCCCAAAATTGGTACCCTTAGGCACGCAGTTACAAGGACCGGTCCCTTGTGGATTATCTTTGCACGCAGCATGGTGATCACACTGCAGCAGGAGCTAATTATGGCTGGGGATAAGACCATTGATGGCAGAGGAGCTACTGTTGTAATCACAGGAGGGGCTGGCATTACCATCCAGTTTATCAAGAATGTGATCATTCACAACATTAAGATCTACAACATTCAGTCTACCAGTGGTGGATTGATTAGAGATAGTGAACAACATTATGGTTTGAGGACAAGAAGCGATGGTGATGGGATTTCAATCTTTGGCTCCAGCAAAATCTGGATTGATCATGTTTCCATGAGCAATTGCGGTGATGGACTCATAGATGCTATCATGGGATCCACTGCCATCACCATCTCCAATAGCCATTTCACAAAGCACAATGAGGTGATGTTGTTTGGCGCCAGCGACAGCTACGCAGGAGACCAGATTATGCAAATCACCGTGGCATTCAATCACTTTGGACGGGGATTAGTCCAAAGGATGCCAAGGAGCAGGTGGGGTTTCGTTCATGTGGTTAACAATGACTACACTCACTGGGAAATGTACGCCATTGGTGGCAGCCAGCATCCTACCGTCATCAGTGAGGGTAATAGATTCATAGCCCCGCATAACATGTTTGCCAAAGAGATTACTAAGAGAGAGTACTCACCGGAAAGCGTGTGGAAGAACTGGCAATGGAGATCAGTCAATGACCTACTCATGAACGGAGCTATATTTATAGAATCTGGGACTGGTCTTCCAGTGTCGACGCGTGACAAGCTTAAGGGCAAGCCTGGATCATATGTATCAAGACTCACACGCTTCTCTGGAATGCACCGGTGCCATGTGGGTAAGCCCTGCTAA 1347 0.4625 MNRNITLFSFFLLICWVAIPTLHANVLENETFWNEHSIEFDQYWHQRANEAEKANKEEYQSNPYEVVGNITASVERMLLSTGREGRSLRQRGPHKGPCMATNPIDRCWRCDPNWERNRQKLADCVLGFGKGTTGGKGGPYYVVTDPSDNDLVNPKIGTLRHAVTRTGPLWIIFARSMVITLQQELIMAGDKTIDGRGATVVITGGAGITIQFIKNVIIHNIKIYNIQSTSGGLIRDSEQHYGLRTRSDGDGISIFGSSKIWIDHVSMSNCGDGLIDAIMGSTAITISNSHFTKHNEVMLFGASDSYAGDQIMQITVAFNHFGRGLVQRMPRSRWGFVHVVNNDYTHWEMYAIGGSQHPTVISEGNRFIAPHNMFAKEITKREYSPESVWKNWQWRSVNDLLMNGAIFIESGTGLPVSTRDKLKGKPGSYVSRLTRFSGMHRCHVGKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01208 448 PANTHER PECTATE LYASE 18-RELATED 51 446 IPR045032 GO:0030570
Accr10g01208 448 SMART amb_all 176 373 IPR002022 -
Accr10g01208 448 Pfam Pectate lyase 190 367 IPR002022 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Accr10g01208 448 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Accr10g01208 448 Gene3D - 101 440 IPR012334 -
Accr10g01208 448 Pfam Pectate lyase, N terminus 39 80 IPR007524 GO:0030570
Accr10g01208 448 SUPERFAMILY Pectin lyase-like 102 419 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01208 Accr-Chr10 34483960 34485846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01208 7 448 Polysaccharide Lyase AT2G02720 56.209 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01208 K01728 - gmx:100796307 617.846