LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g01205	ATGGAAGGAACTTCTTTGAAATGTGAACCGAGCCAAACAAGCCACTCTTACATGGTGGATGGTGGTGAGAGTGATGCTGGTAAGTGTGGCAAAAGGAGGCGTAGAGATTCTTCTTTGGCCGTCTTAGAAGTCAATGAACAGCCACAAGAACAGCAGCCACAGGCTGACCGATCAACCACCACCACCGTGAAGAGAAGCTCAAGACATAGGTGGACAGGAAGGTATGAGGCTCACCTATGGGATAAAGGAACATGGAATCCAACTCAGAAAAAGAAAGGGAAGCAAGGGGCTTATACTGATGAAGAAGCAGCTGCTAGAGCTTATGATTTAGCTGCACTAAAGTACTGGGGAACTTCAACTTTCATAAATTTCTCTGTGTCTGAGTATGAGAAAGAGATTGAGATCATGAAAAATGTAACCAAAGAAGAATACCTTGCTTCATTAAGAAGGAGAAGTAGTGGATTTTCTAGAGGTGTGTCAAGGTACAGAGGAGTAGCAAGGCACCATCACAATGGCAGATGGGAAGCAAGGATTGGGAGAGTATTTGGCAACAAGTACCTATACCTTGGGACTTACAGTACACAAGAAGAGGCTGCTCGCGCATATGACATCGCAGCGATTGAGTACAGAGGCATAAATGCAGTGACTAATTTTGACTTGAGCACATACATCAGATGGCTTAGACCTGGATCATCTTCTTCCTCTTCTTTACTAGTGGAAAAGCCAAGCACAGATCCTCAGATCATGACAACCTCAAACCTTGTCCCCACAGATGGAACAAATGAGGCAGCCAATTTCATCCCCCATCCATTCCCAGCTGGTGATTCTGACATTACAGAGAAGCAAGCAAGTTCACAATACATGAGCTCTCTAAGTGCCTTCAATAACAAGTCATCTTCCCCGACAGCACTGGGGATTCTCCTGAAATCATCAGTTTTTAGAGAGCTAATGCAGAAGAATCTGAATTCTGCTAATGAAGAAGCAGAAGAAAGTGAATTGAAGATCCCACAACAAGAAGGCAGTCATGGGGTTGGAGTGGCTTTTGATCATGAAGTTGCAAGTAACTCTTTCTTGTGCACTCCCAGTAGTTGCAGATTTTGCATGGAGCCACTAGGAGGAAGCACATGCCCATTGTATCATAGAACCAGGCAATCCCTATGGGGTGGTGCTTTAAACTGA	1179	0.4453	MEGTSLKCEPSQTSHSYMVDGGESDAGKCGKRRRRDSSLAVLEVNEQPQEQQPQADRSTTTTVKRSSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYTDEEAAARAYDLAALKYWGTSTFINFSVSEYEKEIEIMKNVTKEEYLASLRRRSSGFSRGVSRYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGSSSSSSLLVEKPSTDPQIMTTSNLVPTDGTNEAANFIPHPFPAGDSDITEKQASSQYMSSLSAFNNKSSSPTALGILLKSSVFRELMQKNLNSANEEAEESELKIPQQEGSHGVGVAFDHEVASNSFLCTPSSCRFCMEPLGGSTCPLYHRTRQSLWGGALN	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g01205	392	ProSiteProfiles	AP2/ERF domain profile.	161	219	IPR001471	GO:0003700\|GO:0006355
	Accr10g01205	392	Coils	Coil	314	334	-	-
	Accr10g01205	392	ProSiteProfiles	AP2/ERF domain profile.	62	125	IPR001471	GO:0003700\|GO:0006355
	Accr10g01205	392	FunFam	AP2-like ethylene-responsive transcription factor	160	221	-	-
	Accr10g01205	392	CDD	AP2	160	221	IPR001471	GO:0003700\|GO:0006355
	Accr10g01205	392	SUPERFAMILY	DNA-binding domain	160	221	IPR016177	GO:0003677
	Accr10g01205	392	Gene3D	AP2/ERF domain	63	127	IPR036955	GO:0003700\|GO:0006355
	Accr10g01205	392	Gene3D	AP2/ERF domain	160	221	IPR036955	GO:0003700\|GO:0006355
	Accr10g01205	392	MobiDBLite	consensus disorder prediction	42	61	-	-
	Accr10g01205	392	MobiDBLite	consensus disorder prediction	1	19	-	-
	Accr10g01205	392	MobiDBLite	consensus disorder prediction	25	40	-	-
	Accr10g01205	392	Pfam	AP2 domain	160	211	IPR001471	GO:0003700\|GO:0006355
	Accr10g01205	392	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	46	292	-	-
	Accr10g01205	392	MobiDBLite	consensus disorder prediction	1	68	-	-
	Accr10g01205	392	SUPERFAMILY	DNA-binding domain	67	127	IPR016177	GO:0003677
	Accr10g01205	392	SMART	rav1_2	68	131	IPR001471	GO:0003700\|GO:0006355
	Accr10g01205	392	SMART	rav1_2	161	225	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g01205	Accr-Chr10	34467682	34470471	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g01205	33	223	AP2-EREBP Transcription Factor Family	AT5G57390	59.278	9.15e-75	237

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Accr10g01205		AP2	1.6e-11	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g01205	-		-	gmx:100798483	459.144