Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01203 ATGATTTCCGTTGAAATTTACTCCTCCCGAGTTTCATTTCACGTCCTGAGGTTCTCTACATGGAGGCGAACGAACACGCGGTTCTTAATTTTTCTCCCTTCCAAAACCAAGATGAGCTTCTTCCCATGCATCGCTTGTAGCGATGAATCCTTTCCGTCGCCAGCCCCAAAACAGTTGGGTTATGGTCCTCCGGAGGAATTGTTCGGTCTCGATGTGGAACTTAAGCCGAGCAATGGCAGCTCTCAAACATCGGAGCCCAGGTCGTGGGTTGGTCCAAATGGACAGTACATCAGAGAGTTACCTTGTCCAAGCTGCCGGGGAAGGGGCTATACTCCTTGTACAGAGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAAAGTGTGGTGGGAAGGGTATTGTTACTTGCCACCAGTGTTCAGGAGCTCGTGTTACCTGGGAAGAATCAATTGATGAAAGACCATGGGAAAGAGCCCGTTCCATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGATAATTTAGACATAGAGCTGGATGTGAAGAAAAAATCGAAGCGCATTTATCAGTCACCACCTCCTGAAGTTGGATTAAAGATTAGTCGCTCATTGAAAGATCTTAATGCAAAAACCGGTCTGTTTAGCAAGAGAATGAAGATTATCCATCGTGATCCCATGCTTCGTGCGCAGAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGATGCAGCTAGAAAGCACACCTCTGAAACTATGCAAGCTTTCTTTAGTAACCCAGAAAATCGCCATAAAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACATTACTGTCCAGAACTGAAGGATAGTTTGGTGGATCGGCAATTCACGTGCCGGCTATGTGGGGAAAAAGGCCATAACAGAAGAACATGCAGCAAGTTAAGGATAAGCCACCGAAACGGCAGACCTGTAAAGCTTTATCGCTGTAAAGTATGTCGTCAATACGGCCATAATCGCAGGACCTGCCCTCAATTAGTTGGTACCTCCAAAACGACAGCTTTTCCAAGACCATACAAGTGTCGTTTGTGCCACAAGAATGGGCACAATATCAGGACATGTCCTGATACAAGAGCCATTAGTATCACTGGACTTGCTGGAGATTAA 1179 0.4589 MISVEIYSSRVSFHVLRFSTWRRTNTRFLIFLPSKTKMSFFPCIACSDESFPSPAPKQLGYGPPEELFGLDVELKPSNGSSQTSEPRSWVGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCGGKGIVTCHQCSGARVTWEESIDERPWERARSISPLKVKEDDEVDNLDIELDVKKKSKRIYQSPPPEVGLKISRSLKDLNAKTGLFSKRMKIIHRDPMLRAQRVAAIKKSKGTDAARKHTSETMQAFFSNPENRHKRSIAMKGVNFFCQNCGREGHRRHYCPELKDSLVDRQFTCRLCGEKGHNRRTCSKLRISHRNGRPVKLYRCKVCRQYGHNRRTCPQLVGTSKTTAFPRPYKCRLCHKNGHNIRTCPDTRAISITGLAGD 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01203 392 ProSiteProfiles Zinc finger CCHC-type profile. 276 291 IPR001878 GO:0003676|GO:0008270
Accr10g01203 392 SUPERFAMILY Retrovirus zinc finger-like domains 325 382 IPR036875 GO:0003676|GO:0008270
Accr10g01203 392 ProSiteProfiles Zinc finger CCHC-type profile. 303 318 IPR001878 GO:0003676|GO:0008270
Accr10g01203 392 SMART c2hcfinal6 333 349 IPR001878 GO:0003676|GO:0008270
Accr10g01203 392 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Accr10g01203 392 SMART c2hcfinal6 302 318 IPR001878 GO:0003676|GO:0008270
Accr10g01203 392 SMART c2hcfinal6 275 291 IPR001878 GO:0003676|GO:0008270
Accr10g01203 392 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 65 317 - -
Accr10g01203 392 SUPERFAMILY Retrovirus zinc finger-like domains 273 319 IPR036875 GO:0003676|GO:0008270
Accr10g01203 392 Gene3D - 329 386 - -
Accr10g01203 392 Gene3D - 267 319 - -
Accr10g01203 392 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 99 147 IPR036410 -
Accr10g01203 392 Pfam Zinc knuckle 360 379 IPR025829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01203 Accr-Chr10 34451306 34456956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01203 13 379 C2H2 Transcription Factor Family AT5G20220 58.612 4.21e-153 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01203 - - gmx:100800156 570.852