Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01202 ATGTCGCAGCTTCACTGTCTATCTTCTTCTTCCTCACTCACCGCACAGTATTCCATTCAACTATGCCCTACCCACAGTTTCTATCCAAAGAAGTCCCTTTCTTCTCGCCCTTCTTCAACGTCCAGCGGCTCCAACTTCGCCCTCACCCTCCCATCCTCTCGCACAAACCCATTTTCTATCAAATGCCGCCAATCTGAGTACTTCGAACAACAAAGCTTCACCAGACCCATGAGAAATGCCAACGGAAACGATGCAGTTGGAGCTCTGCCGCCTAGGGTTTATGTGGGTCACTCGGTTTACAAAGGGAAGGCTGCTCTTACGGCGACTCCCAGGCCTCCAGAGTTTGCGTCATTGGAGTCTGGAGCATTCAAAGTATCTAAGGAAGGTTATGTGCTGCTTCAGTTCGCTCCTGCAGTTGGTATGCGCCAGTATGACTGGAACAGAAAGCAGGTATTCTCTCTATCAGTGACTGAAATGGGAAATCTAATTAGCCTTGGTGCAAGGGATTCGTGTGAATTTTTTCATGATCCTTTCAAGGGGAAGAGTGATGAAGGTAAAATCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGAGTGAGAACGTGGATGAAAGCATCTATATCCCTATTACAAAAGCAGAGCTATCAGTTTTCCACTCACTTTTCAATTATATCATGCCATACCTTCTGGGTTGGCATGCGTTTGCAAATTCTATAAAACCAGATGATCAAAGTCGATTGAATAGCGCCAATCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 828 0.4517 MSQLHCLSSSSSLTAQYSIQLCPTHSFYPKKSLSSRPSSTSSGSNFALTLPSSRTNPFSIKCRQSEYFEQQSFTRPMRNANGNDAVGALPPRVYVGHSVYKGKAALTATPRPPEFASLESGAFKVSKEGYVLLQFAPAVGMRQYDWNRKQVFSLSVTEMGNLISLGARDSCEFFHDPFKGKSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKSENVDESIYIPITKAELSVFHSLFNYIMPYLLGWHAFANSIKPDDQSRLNSANPRYGGDYEWNR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01202 275 Gene3D Transcriptional Coactivator Pc4; Chain A 86 263 IPR009044 GO:0003677|GO:0006355
Accr10g01202 275 Pfam Whirly transcription factor 99 233 IPR013742 GO:0003697|GO:0006355|GO:0006952
Accr10g01202 275 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 53 275 IPR013742 GO:0003697|GO:0006355|GO:0006952
Accr10g01202 275 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 84 259 - -
Accr10g01202 275 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 275 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01202 Accr-Chr10 34446818 34449840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01202 46 275 Whirly Transcription Factor Family AT1G14410 68.261 1.16e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Accr10g01202 Whirly 2.8e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01202 K26559 - pcin:129310571 471.47