Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01183 ATGTCTAGCAGAAGATCTCGTTCCAGCACCAGAGAGATCAGTGATGCCCAGATCAACGATCTCGTCTCCAAGTTACAACGCCTTATTCCTCAGCTTCAACCCTCTACCTCCCACCACGAGGTATCGGCAGCAAAGGTGTTGAAGGAGACTTGCGACTATGTAAAGAGGTTGCACAGAGAAGTTGATGATCTTAGTGATCGATTATCTGAGCTTTTGGCTAACACTGACTCCCACAGTGCCGAAGCTGCCATTCTTAGGTCCTTGCTTATGTAA 273 0.4762 MSSRRSRSSTREISDAQINDLVSKLQRLIPQLQPSTSHHEVSAAKVLKETCDYVKRLHREVDDLSDRLSELLANTDSHSAEAAILRSLLM 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01183 90 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Accr10g01183 90 Gene3D - 16 89 IPR036638 GO:0046983
Accr10g01183 90 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
Accr10g01183 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 57 IPR011598 GO:0046983
Accr10g01183 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 78 IPR036638 GO:0046983
Accr10g01183 90 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01183 Accr-Chr10 34056275 34056670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01183 13 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 62.338 4.85e-28 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g01183 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01183 - - gmx:100804830 120.938