Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01157 ATGGACTTGACCCCCACAACCACCGCCTCGCCGTCTGCCACCGCCCACTTTGATTCTCTCCATACTCCAATCCCACCGCCTATCCACCCCACCACCAACACCACCAAGTCTCTTTCTTTAACCAACGGCTCCCTCAAGCGCCACCACCACCCTTCTCCTCATCCGCCGCCGCCCCCTGTGGTTTCCTACAAGGAATGCCTCAAGAACCACGCCGCCAACATCGGTGGCTACGCGCTTGATGGTTGTGGCGAGTTCATGCCTTCCTCCGCCTCCATCCCCAGTGACCCACGCTCCATCAAATGCGCTGCGTGCGGCTGCCACCGCAACTTCCACCGCCGTGACTCCCAAGAGCCTCAATCCGCCAGTCCCAACTTCTTAAGCTACTTCTACCCTCCGCTGCCTCCTCCTCCTCCGCCGCCGCTAGCTCCCCGGGGTTTAAGCCCGAGCACTAGCCCAAGCTCGAGCCCAAGCAGCACAAGTCTCAGCCCGTTGTCAAGCCCGTCGCCGCCACCGGTCTCGCATTTCCCTCCTCCTTCCTACCACCCATCGGCACCGCACATGTTGATAGCAATCGGGAGCGCTTATTCTGGACCGTCTGATGAGCAGCATCACCAGAGCTTCATGAATTCTTCGGCGATGAAGACGCCGACCACGACGGAGAAGGAGAGACAAGGTGGGAGAAAGAGGTACAGAACGAAATTCAGTCAAGAACAGAAGGAGAAGATGCTTCAGTTCTGTGAGAAATTGGGTTGGAGAATGCAGAAAGGAGATAATAGGATGATCCAAGATTTCTGCAATGAGGTTGGTGTCTCCAGAGGAGTGTTCAAAGTTTGGATGCACAACAACAAGAACACATTCAGGAAAAAATCAGAAATTGGGAACACCCAAACTGAGAAAATCATCAATGAAGGTGATGATCATAGTCGAGGAGGTGGTGGTGGGTTTGATTGTGATATAAAGGACGGCAATAATCACAGGAATGAAGGTAGCTGTATTAATCTTCAAGTCTCTGTTAATGGATCTTCTTCTTGA 1032 0.5339 MDLTPTTTASPSATAHFDSLHTPIPPPIHPTTNTTKSLSLTNGSLKRHHHPSPHPPPPPVVSYKECLKNHAANIGGYALDGCGEFMPSSASIPSDPRSIKCAACGCHRNFHRRDSQEPQSASPNFLSYFYPPLPPPPPPPLAPRGLSPSTSPSSSPSSTSLSPLSSPSPPPVSHFPPPSYHPSAPHMLIAIGSAYSGPSDEQHHQSFMNSSAMKTPTTTEKERQGGRKRYRTKFSQEQKEKMLQFCEKLGWRMQKGDNRMIQDFCNEVGVSRGVFKVWMHNNKNTFRKKSEIGNTQTEKIINEGDDHSRGGGGGFDCDIKDGNNHRNEGSCINLQVSVNGSSS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01157 343 MobiDBLite consensus disorder prediction 31 46 - -
Accr10g01157 343 MobiDBLite consensus disorder prediction 163 180 - -
Accr10g01157 343 Gene3D - 212 289 - -
Accr10g01157 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 285 - -
Accr10g01157 343 MobiDBLite consensus disorder prediction 1 17 - -
Accr10g01157 343 MobiDBLite consensus disorder prediction 198 219 - -
Accr10g01157 343 SUPERFAMILY Homeodomain-like 217 288 IPR009057 -
Accr10g01157 343 MobiDBLite consensus disorder prediction 128 146 - -
Accr10g01157 343 MobiDBLite consensus disorder prediction 147 162 - -
Accr10g01157 343 MobiDBLite consensus disorder prediction 112 180 - -
Accr10g01157 343 MobiDBLite consensus disorder prediction 220 236 - -
Accr10g01157 343 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Accr10g01157 343 MobiDBLite consensus disorder prediction 194 236 - -
Accr10g01157 343 FunFam Zinc-finger homeodomain protein 2 214 288 - -
Accr10g01157 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Accr10g01157 343 MobiDBLite consensus disorder prediction 1 60 - -
Accr10g01157 343 NCBIfam homeobox domain, ZF-HD class 227 284 IPR006455 -
Accr10g01157 343 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01157 Accr-Chr10 33609782 33610813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01157 61 286 ZF-HD Transcription Factor Family AT1G69600 47.619 2.82e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr10g01157 ZF-HD_dimer 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01157 - - gmx:100814924 303.523