Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01154 ATGGAGGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCGTGCGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGACTAATAAATTTAAGACCAATGTTGGTGATAGTGTTGTCAAGTTCGATGGTGGAAGGAAGAAGGAGAGAGATTTTGGTTCTGATGAAGAAGAAACTGCTTCTGAAAACCCCATTTATGATCTCAAAGAGAATCCCAAGAAGAGAACGAAGAAGAAGAAGAAGATCGTAATAATTCCCAAAGCTTCTCCTCTACAAAAAGAAAGATTCTGTAAAGAATGTGGGAAAGGCTTTTCGTCTCTCAAAGCTCTCTGCGGCCACATGGCTTGTCACTCGGAGAAAGATAAAGGGACGATGAAGAACAAGTTCGAGAACCACTCTGGGTTTGGCGTGAAGCAGAAAATGGTGATGATGATGGATAGCGAATCGGACACAGAGACATTATCTGCTCCAAACTATCCTAGGAGATCCAGAAGTATGAGGCTCAAGACAGTGAATACTGATACAAATGGTTCTTCCTCTGTGTCTGATGTGGAGCAAGAACAAGAAGAAGTCGCCAAGTGTTTGATGTTATTGTCCAAAGACACGAGAATCATTTTCAAAAATGGTAAAAGAAGTGTTGAGTCTAAAGGTGTTGAGATCGTGGAGGAGGAGAAGGCGGTGCTATATAAGAACATGAAGTTGAAGTCTGGTGAGATTGTTGATCCTGATAATTCAGATTCTGGGTTTTTCAGAAATGGTCCCAAAATGTTAAATTTGGATGTTCCAATTGATAAGCATCTCAGGAATAGGGAATTCAAAACACTAAAAGTGGAAGACAGGTCTGAATATAGGAACGAGGGGCTGATCAAGAACAGAGGAAGAACAAGAATCACTGAACCCAAAAAACTAATTTTGGAGGATATGGACTATGATACAACAGATGGATTCACAAGGGAAGAGTTCATCAATTGGAGAAAGAGACCAAGCTATAATTCTCTCTGCCAAAACAATCAAATCGGTGTTTCTTGCAAGAAGACACCAAATGGTTTTCACACTGAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAGTCATCATCAGTGGCTCTTATGATGATGATGATGATGATTCATCAGCATATGATGAGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCAGATATCTAACAAAGTCAATGCAAAGAAGATCAGCAAGTGCAAGAAGAAATTGGAGTCAAACAAAAGCAGGGACCATAGATGCCCCATCTGCTACAAAATGTTCAAGTCAGGTCAAGCATTAGGAGGTCACAAAAGGTCTCATTTTATTGGAGGTTCTGACGAGAACACACTGGTGATCAAACAAGATTCTCCTGTTGTTCAATGTCTGATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1443 0.4075 MEERKFVCKYCNKKYPCGKSLGGHIRTHMTNKFKTNVGDSVVKFDGGRKKERDFGSDEEETASENPIYDLKENPKKRTKKKKKIVIIPKASPLQKERFCKECGKGFSSLKALCGHMACHSEKDKGTMKNKFENHSGFGVKQKMVMMMDSESDTETLSAPNYPRRSRSMRLKTVNTDTNGSSSVSDVEQEQEEVAKCLMLLSKDTRIIFKNGKRSVESKGVEIVEEEKAVLYKNMKLKSGEIVDPDNSDSGFFRNGPKMLNLDVPIDKHLRNREFKTLKVEDRSEYRNEGLIKNRGRTRITEPKKLILEDMDYDTTDGFTREEFINWRKRPSYNSLCQNNQIGVSCKKTPNGFHTEGSWKQESLNSEKVIISGSYDDDDDDSSAYDESDESSTDTDAYPAQISNKVNAKKISKCKKKLESNKSRDHRCPICYKMFKSGQALGGHKRSHFIGGSDENTLVIKQDSPVVQCLIDLNLPAPVDD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01154 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Accr10g01154 480 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Accr10g01154 480 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 479 - -
Accr10g01154 480 SUPERFAMILY beta-beta-alpha zinc fingers 98 447 IPR036236 -
Accr10g01154 480 MobiDBLite consensus disorder prediction 373 392 - -
Accr10g01154 480 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Accr10g01154 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Accr10g01154 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 425 447 IPR013087 -
Accr10g01154 480 SMART c2h2final6 425 447 IPR013087 -
Accr10g01154 480 SMART c2h2final6 6 28 IPR013087 -
Accr10g01154 480 SMART c2h2final6 97 119 IPR013087 -
Accr10g01154 480 SUPERFAMILY beta-beta-alpha zinc fingers 2 33 IPR036236 -
Accr10g01154 480 Pfam C2H2-type zinc finger 99 121 - -
Accr10g01154 480 Pfam C2H2-type zinc finger 6 29 - -
Accr10g01154 480 Pfam C2H2-type zinc finger 425 447 - -
Accr10g01154 480 MobiDBLite consensus disorder prediction 371 398 - -
Accr10g01154 480 ProSitePatterns Zinc finger C2H2 type domain signature. 427 447 IPR013087 -
Accr10g01154 480 Gene3D Classic Zinc Finger 72 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01154 Accr-Chr10 33562073 33563515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01154 1 480 C2H2 Transcription Factor Family AT1G26610 35.382 1.13e-70 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01154 zf-C2H2_6 9.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01154 - - pcin:129310630 551.977