Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01153 ATGAACATGTTGAAGATTCGAGATAATTCAGATCAAGCTTTCATGGAGGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTACCCGTGCGGGAAGTCTCTGGGTGGACACATCAGAACTCATATGACTAATAAATTTAAGACCAATGTTGGTGATAGTGTTGTCAAGTTCGATGGTGGAAGGAAGAAGGAGAGAGATTTTGGTTCTGATGAAGAAGAAACTGCTTCTGAAAACCCCATTTATGATCTCAAAGAGAATCCCAAGAAGAGAACGAAGAAGAAGAAGAAGATCGTAATAATTCCCAAAGCTTCTCCTCTACAAAAAGAAAGATTCTGTAAAGAATGTGGGAAAGGCTTTTCGTCTCTCAAAGCTCTCTGCGGCCACATGGCTTGTCACTCGGAGAAAGATAAAGGGACGATGAAGAACAAGTTCGAGAACCACTCTGGGTTTGGCGTGAAGCAGAAAATGGTGATGATGATGGATAGCGAATCGGACACAGAGACATTATCTGCTCCAAACTATCCTAGGAGATCCAGAAGTATGAGGCTCAAGACAGTGAATACTGATACAAATGGTTCTTCCTCTGTGTCTGATGTGGAGCAAGAACAAGAAGAAGTCGCCAAGTGTTTGATGTTATTGTCCAAAGACACGAGAATCATTTTCAAAAATGGTAAAAGAAGTGTTGAGTCTAAAGGTGTTGAGATCGTGGAGGAGGAGAAGGCGGTGCTATATAAGAACATGAAGTTGAAGTCTGGTGAGATTGTTGATCCTGATAATTCAGATTCTGGGTTTTTCAGAAATGGTCCCAAAATGTTAAATTTGGATGTTCCAATTGATAAGCATCTCAGGAATAGGGAATTCAAAACACTAAAAGTGGAAGACAGGTCTGAATATAGGAACGAGGGGCTGATCAAGAACAGAGGAAGAACAAGAATCACTGAACCCAAAAAACTAATTTTGGAGGATATGGACTATGATACAACAGATGGATTCACAAGGGAAGAGTTCATCAATTGGAGAAAGAGACCAAGCTATAATTCTCTCTGCCAAAACAATCAAATCGGTGTTTCTTGCAAGAAGACACCAAATGGTTTTCACACTGAGGGATCATGGAAGCAAGAGAGCTTAAACAGTGAAAAAGTCATCATCAGTGGCTCTTATGATGATGATGATGATGATTCATCAGCATATGATGAGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCAGATATCTAACAAAGTCAATGCAAAGAAGATCAGCAAGTGCAAGAAGAAATTGGAGTCAAACAAAAGCAGGGACCATAGATGCCCCATCTGCTACAAAATGTTCAAGTCAGGTCAAGCATTAGGAGGTCACAAAAGGTCTCATTTTATTGGAGGTTCTGACGAGAACACACTGGTGATCAAACAAGATTCTCCTGTTGTTCAATGTCTGATTGATCTCAATCTACCTGCTCCTGTTGATGATTAG 1485 0.4054 MNMLKIRDNSDQAFMEERKFVCKYCNKKYPCGKSLGGHIRTHMTNKFKTNVGDSVVKFDGGRKKERDFGSDEEETASENPIYDLKENPKKRTKKKKKIVIIPKASPLQKERFCKECGKGFSSLKALCGHMACHSEKDKGTMKNKFENHSGFGVKQKMVMMMDSESDTETLSAPNYPRRSRSMRLKTVNTDTNGSSSVSDVEQEQEEVAKCLMLLSKDTRIIFKNGKRSVESKGVEIVEEEKAVLYKNMKLKSGEIVDPDNSDSGFFRNGPKMLNLDVPIDKHLRNREFKTLKVEDRSEYRNEGLIKNRGRTRITEPKKLILEDMDYDTTDGFTREEFINWRKRPSYNSLCQNNQIGVSCKKTPNGFHTEGSWKQESLNSEKVIISGSYDDDDDDSSAYDESDESSTDTDAYPAQISNKVNAKKISKCKKKLESNKSRDHRCPICYKMFKSGQALGGHKRSHFIGGSDENTLVIKQDSPVVQCLIDLNLPAPVDD 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01153 494 MobiDBLite consensus disorder prediction 385 410 - -
Accr10g01153 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Accr10g01153 494 SUPERFAMILY beta-beta-alpha zinc fingers 16 47 IPR036236 -
Accr10g01153 494 Gene3D Classic Zinc Finger 5 137 - -
Accr10g01153 494 MobiDBLite consensus disorder prediction 387 406 - -
Accr10g01153 494 SMART c2h2final6 439 461 IPR013087 -
Accr10g01153 494 SMART c2h2final6 20 42 IPR013087 -
Accr10g01153 494 SMART c2h2final6 111 133 IPR013087 -
Accr10g01153 494 ProSitePatterns Zinc finger C2H2 type domain signature. 441 461 IPR013087 -
Accr10g01153 494 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 15 493 - -
Accr10g01153 494 SUPERFAMILY beta-beta-alpha zinc fingers 112 461 IPR036236 -
Accr10g01153 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 439 461 IPR013087 -
Accr10g01153 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Accr10g01153 494 Pfam C2H2-type zinc finger 20 43 - -
Accr10g01153 494 Pfam C2H2-type zinc finger 439 461 - -
Accr10g01153 494 Pfam C2H2-type zinc finger 113 135 - -
Accr10g01153 494 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Accr10g01153 494 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01153 Accr-Chr10 33562073 33563643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01153 15 494 C2H2 Transcription Factor Family AT1G26610 35.382 1.64e-70 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01153 zf-C2H2_6 9.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01153 - - pcin:129310630 551.977