Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01139 ATGGCTTCTGAATCCAATGCTTCTGAGAATTCGTCCCTCTTTGAAAGCTTGTTCGGATTCAGAGAGCTCTCTGCTTTCTTACCCTTCATGTTAGGCTTCTCCACCGGTTCTTCTTCAAGACAAGACAATCAAGACCCAAATCAGGAAACCACAAATTCAGAAAATAGTAATAATACCCATGGCGAGAGAGAAAGAGTGATCTTGATCAACCCCTTTACGCAGGGGATGGTGGTGATTGACGGTACTGCGAGCCTCGAGACTCTGTTCCAAGAAATTGGCATGAAAAATGGGCATCCGCCGGCATCGAAGGAGTCTATAGAAGCGTTGCCGAGCGTGGAAATCGGAGAAGGAGAAGGCAGCAGCAGCGGCGAGTGTGTGATTTGTTTGGAGGAATTGGAGGTTGGTGGGCTGGCGAAAGAGATGCCTTGTAAGCACAAGTTTCATGAGAATTGTATAGAAAAGTGGTTGGGAATTCATGGGTCTTGCCCTGTTTGTAGATACCAGATGCCTGTGGCTGAGAAAGAAGCAGGCAAGAAAGATGAAGAACAAGAACAAGAAGTAGGAGGAGGAGAAAGAAGGAGGGTTGGCAGAGAAATTTGGGTGAGCTTCAACTTTAGAAGTGAGAATTCAAACCAAGCTCCTTCTGATAATTCTAGTGATTCCTCGTCAAGTCCAATAGGTGATTCTGAGGTAGAGAATTAG 702 0.4573 MASESNASENSSLFESLFGFRELSAFLPFMLGFSTGSSSRQDNQDPNQETTNSENSNNTHGERERVILINPFTQGMVVIDGTASLETLFQEIGMKNGHPPASKESIEALPSVEIGEGEGSSSGECVICLEELEVGGLAKEMPCKHKFHENCIEKWLGIHGSCPVCRYQMPVAEKEAGKKDEEQEQEVGGGERRRVGREIWVSFNFRSENSNQAPSDNSSDSSSSPIGDSEVEN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01139 233 Pfam Ring finger domain 124 166 IPR001841 -
Accr10g01139 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 172 IPR013083 -
Accr10g01139 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 42 170 - -
Accr10g01139 233 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Accr10g01139 233 MobiDBLite consensus disorder prediction 173 193 - -
Accr10g01139 233 MobiDBLite consensus disorder prediction 36 62 - -
Accr10g01139 233 MobiDBLite consensus disorder prediction 36 57 - -
Accr10g01139 233 MobiDBLite consensus disorder prediction 206 233 - -
Accr10g01139 233 SMART ring_2 125 165 IPR001841 -
Accr10g01139 233 FunFam E3 ubiquitin-protein ligase RNF181 89 172 - -
Accr10g01139 233 SUPERFAMILY RING/U-box 108 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01139 Accr-Chr10 33430722 33431423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01139 1 205 C3H Transcription Factor Family AT1G26800 46.667 3.16e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01139 - - cave:132177426 223.402