Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01119 ATGGGCAGGGTAAAGTTGAAGATAAAGAGGCTGGAGAACACTAATCGTCGTCAGGCTACCTATGCTAAAAGGAGGAATGGAATTATGAAAAAAGCTTTGGAATTGTCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCGACTGGGAAGCCAGCACTATGCAGAGGGAGGCGTAGTAACATAGAGGAGGTTATTACAAAGTTTGCACAACTAACTCGACAGGAAAGGGCAAAGAGGAAGTTGGAGGGTCTTGAAGCTCTGAAGAAAACATTTAAGAAGTTGGACCACGATGTAAATGTACAAGAATTTCTGGGTACAAGCGCTCAAACTGTTGAGGACCTAAAGAATAACGCCACTTCTTTACGAACTCGTATATCTGAAATACATACAAGATTAAGCCATTGGGTTGAACTTGATAAAATTAACAATGCGGAACAATTGGAACAGATGGAAAAGTCTCTCAGGGAGTCAATTAATCAACTTCGATTGCACAAGGAAAATATACAAAAGCAACAGCTTGAATCATTGCAATGCAGCAACCAGTTCAATGAGATTCCCATCAGGATGAGTGCTGATCAACCTCTCCAAAATATATCATGGATTGCCAACAATGACAGCCAACATATGGTTTTACCTGATGACTCAAACTTGCTTCTCCCCAAAGACACAAAGTGCTCTGCAAGTTCCTCCTCTTTTGGGAGTTTTGCTAGTTATCTTGGCTCAAGTCAAAAATCAGATCTTTCTAATCCTGGGCAAGATAATGGTGTCCTTAGTGACATGACTAGTGCAGCTTATCTGAGACAACAATTAGGCGGGCAGTTTCCGTACCTGCCATATAATTTCAATCTACAGAATGACACCAGGTTCCAGCCATCGGCAGCAATCAACCCACACGAAAACCCCATAGATTATCATCCTAATCAAAGCTTTGAAGCTCCTAGACTTGCCTTCGACTCTAACAACCATGGATGGGCTTCCACATCAGAGCCTTGTGCTGTTACCGCCATGCTCAATGAGTATTTGTATGCCCAGGGGCCACAATGA 1053 0.4207 MGRVKLKIKRLENTNRRQATYAKRRNGIMKKALELSILCDIDIILLMFSPTGKPALCRGRRSNIEEVITKFAQLTRQERAKRKLEGLEALKKTFKKLDHDVNVQEFLGTSAQTVEDLKNNATSLRTRISEIHTRLSHWVELDKINNAEQLEQMEKSLRESINQLRLHKENIQKQQLESLQCSNQFNEIPIRMSADQPLQNISWIANNDSQHMVLPDDSNLLLPKDTKCSASSSSFGSFASYLGSSQKSDLSNPGQDNGVLSDMTSAAYLRQQLGGQFPYLPYNFNLQNDTRFQPSAAINPHENPIDYHPNQSFEAPRLAFDSNNHGWASTSEPCAVTAMLNEYLYAQGPQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01119 350 Coils Coil 77 97 - -
Accr10g01119 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 210 - -
Accr10g01119 350 CDD MADS 2 54 - -
Accr10g01119 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr10g01119 350 Coils Coil 147 177 - -
Accr10g01119 350 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Accr10g01119 350 Coils Coil 114 134 - -
Accr10g01119 350 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Accr10g01119 350 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Accr10g01119 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr10g01119 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr10g01119 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr10g01119 350 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Accr10g01119 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01119 Accr-Chr10 33087681 33094265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01119 1 350 Type I MADS-box Gene Family AT2G03060 45.812 7.28e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr10g01119 SRF-TF 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01119 - - gmx:100811701 483.026