Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01108 ATGGTGAAGTCTTCATCGTGCTGCGAGGAAAAATTAGGGTTAAAGAAAGGACCATGGACTCCTGAGGAAGACCAGAAGCTCGTGTCTTCCATTCAACTACACGGCCATAGAAGCTGGTCTTCCCTGCCTGCTAAAGCTGGACTAAGGAGATGTGGGAAGAGCTGTAGGCTGAGATGGATTAATTATCTAAGACCTGACATCAAACGAGGCAACTTTAGCTTGCGCGAAGATCAAACCATTGTTCAACTTCATGCTCTCCTTGGAAACAGATGGTCGGTGATAGCACGTCACTTGCCACAAAGAACAGACAATGAGATCAAGAATCACTGGAACACCCACCTCAAGAAGGGGCTCATTAGAAAGGGCATCAACCCCACCACCCACAAGCCCTTAAACGACGCAGCCAACCTCATCCACATGGCTCAGTGGGAGACTGCTCGGCTCGAAGCCGAAGCCAGGCAAGTAAAAGAATATTCCAAGCTGCAGCTCCAGAACCAGCTCGGCTCTTCCTCCTCCTCCTCCTCTTCTCAGCCTTCACTAACTCGGCTCGTCCTCAACAAGATCGCACCTCGCTCATTGCCACCAGCGTGCCTCGACGTCCTTAAGGTATGGCAGAATTCATGGTCGTCCACGTCAGCAGATCATAGCACCCCCAAAATGCATAGCATGTACGCCATGATGCTCGCCACGGACGACCTTGAGTCGCCGGCGTCAACGCTGAGCTTCCCGGATAACGTCCCTAGCAACTCCAAATGTCCTAATAGTAACTTTTGGTTGATGAATAAAAGTTCTCTTTCTTCCACCACCACCATCACCCCCGTCAGTAATGACAATGGAATCATGGAAGGAGCTAGAAATGTTGAACCATGTGGAAACAAAGAGCAAAGTAGAGGAGACGACGATATTATGGTGGCCATGGGAGCATTATTTCCCAGTGTTCGGCAATATTATGAAGCTAATGAGATGTCACCACAACAAAACTTGGGAGAGTCAAGTATTGGGGTTGACTGGGAAGCCATTCTTGATGACCTGGTCAATGGTTGGCCCCAATCAACTGCTTTCCCTGTGGTGTGA 1074 0.4935 MVKSSSCCEEKLGLKKGPWTPEEDQKLVSSIQLHGHRSWSSLPAKAGLRRCGKSCRLRWINYLRPDIKRGNFSLREDQTIVQLHALLGNRWSVIARHLPQRTDNEIKNHWNTHLKKGLIRKGINPTTHKPLNDAANLIHMAQWETARLEAEARQVKEYSKLQLQNQLGSSSSSSSSQPSLTRLVLNKIAPRSLPPACLDVLKVWQNSWSSTSADHSTPKMHSMYAMMLATDDLESPASTLSFPDNVPSNSKCPNSNFWLMNKSSLSSTTTITPVSNDNGIMEGARNVEPCGNKEQSRGDDDIMVAMGALFPSVRQYYEANEMSPQQNLGESSIGVDWEAILDDLVNGWPQSTAFPVV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01108 357 FunFam MYB transcription factor 70 131 - -
Accr10g01108 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Accr10g01108 357 Gene3D - 15 68 - -
Accr10g01108 357 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Accr10g01108 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 221 - -
Accr10g01108 357 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Accr10g01108 357 Gene3D - 71 136 - -
Accr10g01108 357 CDD SANT 71 114 IPR001005 -
Accr10g01108 357 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Accr10g01108 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Accr10g01108 357 CDD SANT 18 63 IPR001005 -
Accr10g01108 357 FunFam MYB-related transcription factor 15 68 - -
Accr10g01108 357 SMART sant 15 65 IPR001005 -
Accr10g01108 357 SMART sant 68 116 IPR001005 -
Accr10g01108 357 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Accr10g01108 357 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01108 Accr-Chr10 32889842 32891221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01108 5 178 MYB Transcription Factor Family AT5G15310 66.486 1.03e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g01108 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01108 K09422 - gmx:100792994 327.791