Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01105 ATGGTGAAGTCAGGCAGCAGAGATAAACAAGCAGGTTTAAAGAAAGGACCGTGGACTCCTGAGGAAGACCAGAAGCTCATGTATTACATTCAACTACACGGCCAAGGAAGCTGGTCTTCCTTGCCTGCTAAAGCTGGACTCCGGAGAAGTGGCAAAAGCTGTAGGCTGAGATGGATTAATTATCTAAGACCTGATATCAAACGAGGCAAGTTCAGTTTACAGGAAGATCAAACCATTATTCAACTTCATGCTCTTCTTGGAAACAAATGGTCGGCCATAGCACATCACTTGCCAAAGAGAACAGACAACGAGATCAAGAACTACTGGAATACCTGCCTTAAGAAGAGACTCACCAGAATGGGTATAAGCCCTAACACCCACAAGCCCATCAACAACGCCGTCAACAACCAGTCAAAGGACTCAGCTAACCTCAACCACACGGTTCAGTGGGAGACTGCTCGGCTTGAAGCCGAAGCCCGGCAATTCAAAGAATATCGCAAGCTTCAGCTCCACCAGAACCAGCTCAGCTCCTCCTCCTCTTCTTCTCAACCTTCACTGACTCGTCTCGTCCTCAACAAGGTCACGCCTCGGCCATCGCGACCACCATGCCTCGACATCCTCAAGGCTTGGTATATCAATCACAGCTTACTTCCTTCAAAACAGAACGCCCCCAAAATGCGTAGTATGTACGCCATGATGCTCGCAACTGATGACCTCGAATTCCCAGCGTCAACATTGAGCTTCCCGGACACTGTCCCTACCAACTCCAAATGTAGTAATAATAATAATAATACTTTTGGGATGATCAATCAAAGTCTACTTCCTTCCTCCTTTACCTCCACTGCCACAAACGAGAATGCAATTGCGAAAGGAGTGTGTGACGATGAAGCTTGTGGGAACAAAGTGGGAAGCTTGGGAAACGACGGCAATATTATGGTGGCAGTGGAAGCATTCAGATCAAGTGGGTATAGCTGTAATTCTGTGGCTGGTCTCTATCATGACGATGTGTTGGCGTATGGATTTAATGAGAACTCAGCATCATCTCAGCAAAACTTGGGAGTCATAAGTGTTGGGAATGGATCAGGAAGCGACAACTTTGAGGGGGAGAGGCAAGATTGGGAAGCCATTCTCGAGTTGGCCAATGGTTTGCCCTCATCGCCTGTATTTCCTGTGTTGTGA 1179 0.4733 MVKSGSRDKQAGLKKGPWTPEEDQKLMYYIQLHGQGSWSSLPAKAGLRRSGKSCRLRWINYLRPDIKRGKFSLQEDQTIIQLHALLGNKWSAIAHHLPKRTDNEIKNYWNTCLKKRLTRMGISPNTHKPINNAVNNQSKDSANLNHTVQWETARLEAEARQFKEYRKLQLHQNQLSSSSSSSQPSLTRLVLNKVTPRPSRPPCLDILKAWYINHSLLPSKQNAPKMRSMYAMMLATDDLEFPASTLSFPDTVPTNSKCSNNNNNTFGMINQSLLPSSFTSTATNENAIAKGVCDDEACGNKVGSLGNDGNIMVAVEAFRSSGYSCNSVAGLYHDDVLAYGFNENSASSQQNLGVISVGNGSGSDNFEGERQDWEAILELANGLPSSPVFPVL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01105 392 CDD SANT 70 111 IPR001005 -
Accr10g01105 392 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Accr10g01105 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 232 - -
Accr10g01105 392 Gene3D - 14 67 - -
Accr10g01105 392 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr10g01105 392 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Accr10g01105 392 FunFam MYB transcription factor 69 130 - -
Accr10g01105 392 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Accr10g01105 392 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Accr10g01105 392 SMART sant 14 64 IPR001005 -
Accr10g01105 392 SMART sant 67 115 IPR001005 -
Accr10g01105 392 Gene3D - 70 147 - -
Accr10g01105 392 FunFam MYB-related transcription factor 14 67 - -
Accr10g01105 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr10g01105 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 62 IPR017930 -
Accr10g01105 392 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01105 Accr-Chr10 32755232 32756800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01105 1 184 MYB Transcription Factor Family AT5G15310 68.984 5.33e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g01105 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01105 K09422 - gmx:100799222 331.257