Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01104 ATGGTTAAGTCGATGCTGGGAGCGAAGGCAGTGTTAAAGAAAGGGCCATGGACTCGTGAGGAAGATGAGAAGCTCATGGCTTACATTCAACAACATGGCCATGGAAGTTGGTGTTCCTTGCCTGCTAAAGCTGGACTTGAAAGATGTGGGAAGAGCTGCAGACTGAGATGGATTAATTATCTAAGGCCTGACATTAAACGAGGCAACTTCAGTTTGCAGGAAGACCAAACCATTATTCAACTCCATGCTCTCCTTGGAAGCAGATGGTCAGCTATAGCACTTCACCTGCCAAAAAGAACAGACAACGAGATCAAGAACCACTGGCACACCCACCTCAAGAAGAGGCTCACCAAAATGGGCATAGACCCCACCACTCACAAACCCATAAACGACGCCGGACACGGCCACGGTGCCAACCTCAACCATATGGCTCAGTGGGAGACTGCTCGGCTCCAAGCCGAAGCCAGACTGGCCAGACGATCCAAGCCGCGGTTCCAGATCAACCAGATCGGCTCCTTCTCTTCCCAACCTTCAACGGCTCGACTTGTCTTCAACAAGATTACACCTCCGCCGTCCCTGCCTCCGTGCCTGGACGTCCTCACGGCTTGGCAGAATTCATGGTCGTCGTCGATGACGTCCAAGTCTTCAACTCCGACGACGATTACCACTGATGAAAACATGTATGCCATGATGCTCGCCACCGACGACGACCTCAAGCCGCCGACGTCAACGTTATGCTTCCCAGACACAATTTCTCTCAACTACAACAGTATTGATAATAGTAACATGACCACCTTTGGACTCATCAATGACAGTTTACTTCCTTCTCCTAATTGCACCAACGCGGCACTGGAAAACTCAGCGGGAAGCTTATTGGGAGACGGAGACGATATTATGGAGGCGGTGGAAGCATTTAGATCAGAAGTGTATAACTGTAATAATTCCATGCAAGGTCTGCACAATAATATTGAGGATGTGTTGATGTATGGATTCAATAATGAGAAATCACCACAACAACAAAACCAGCTGGGAGTAGTCTTTAATGGTGGGGAAGAAGGAAGCACCAACTTCGAGGAGAAGTGTAACACCCCGTTTTATAAAGCGTTTTCGTAA 1113 0.4861 MVKSMLGAKAVLKKGPWTREEDEKLMAYIQQHGHGSWCSLPAKAGLERCGKSCRLRWINYLRPDIKRGNFSLQEDQTIIQLHALLGSRWSAIALHLPKRTDNEIKNHWHTHLKKRLTKMGIDPTTHKPINDAGHGHGANLNHMAQWETARLQAEARLARRSKPRFQINQIGSFSSQPSTARLVFNKITPPPSLPPCLDVLTAWQNSWSSSMTSKSSTPTTITTDENMYAMMLATDDDLKPPTSTLCFPDTISLNYNSIDNSNMTTFGLINDSLLPSPNCTNAALENSAGSLLGDGDDIMEAVEAFRSEVYNCNNSMQGLHNNIEDVLMYGFNNEKSPQQQNQLGVVFNGGEEGSTNFEEKCNTPFYKAFS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01104 370 CDD SANT 69 112 IPR001005 -
Accr10g01104 370 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Accr10g01104 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr10g01104 370 CDD SANT 16 61 IPR001005 -
Accr10g01104 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr10g01104 370 Gene3D - 13 66 - -
Accr10g01104 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Accr10g01104 370 SMART sant 13 63 IPR001005 -
Accr10g01104 370 SMART sant 66 114 IPR001005 -
Accr10g01104 370 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr10g01104 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr10g01104 370 FunFam MYB transcription factor 68 129 - -
Accr10g01104 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr10g01104 370 Gene3D - 69 116 - -
Accr10g01104 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr10g01104 370 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01104 Accr-Chr10 32706486 32708403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01104 1 162 MYB Transcription Factor Family AT3G01140 72.619 1.71e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g01104 Myb_DNA-binding 9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01104 K09422 - gmx:100799222 349.747