Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01065 ATGGCAGCTGAAGCTCCCTTCAAGAACCACAAACCTCGCGGTCACGGTTCTCAGCCGAGGCGGAGGAATCAAGGTGGAAAGCTCAAGATCCTGTTCGTTCCGAAATCTGAATTGGATTCTTCTAATTCTGAGCTTGATCGTTCGCTTGACGAATTAAGCATTCGCGAGGACTTTGATGTCGCGCGAGAATTGGACCCGGAGAACAAGAACGGTTCGGAGCTGAAGAATGAAGTAGAAAATAAGGGAGAAGAGAGTCATGCGGATGATTCAGACAAGGAAGGGAATAGTGTTTATAGTAGACTGGATAAGCAAATGAGGGATGTAGGGGAGCCGGAATTGTCAGAGGAACAGCTGAGTGTTAATGATCAATTGCAAGAAGATGAGTTACTTGCTTTGGAGGCAATTTATGGGGAAAATGTCCTCAAACTCGAGAGATGGAATGGTCTCCGTTGTTTTCAGATACACATACACCTTGAAGTTCTAGATGCAATTGGCATCAAAGCTAAGCTGAATTCTTCTAATGAACACAAGACTGCAAGCAGCAATGCAGATGACTTCTCATACTCTTTTAAAGTCAAATATCTTCCACCAATTATTTTGACATGTTTATTGCCAAAGTCATACCCAAGCCATCAACCGCCTCATTTTATAATCTATGTTAAGTGGTTGGACTCCACAAGAATTTCTAGTTTATGCTCCATGTTAGATTCACTATGGACTGAGCAGCAAGGGCAGGAAGTTATTTACCAGTGGGTAGAATGGTTACATGGTTTTTCTCTATCTCATCTGGGATTTGACAAAGAGATAACTCTTGGTCCTCATGGCATGAAACATGTTGGAGATGAGCGTGCAGTCTCAGGAGCTGTGTCCCTAGATTTTGATGTTCCTTCATTACGAAGTTACAACAATGAGAGACATCATGAGAACTTCCTTAAAGAAATGCATGAATGTGGCATTTGCTTCAATGTATATGCAGGTACAGAGTTTGCTCAGTTACCATGTCAGCATTTTTTCTGCTTAAAATGCTTGCAGACCTTTGCTCAGATGCATGTAAAAGAAGGAACCCTCAGTAATCTTCAATGTCCCGGTTCAAAATGTGCTGTTATGATTCCACCTGCTCTATTAAAATGCTTGCTTGATGATAAAGAGTATGAGCGCTGGGAATCCTTGATGTTGGAGAAAACACTTGAATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTTGTATAGAAGATGAAGAACATCATGCTCAATGCTCTAAATGCTTCTTTAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGCATGGAATGCATGGCCCTAGAGATGAAGCTTCAAATTTTGCAAGAGCGCCAGAATTCATCTCAGTTAAAGGGAGCTCAGAGGCTGAAGGAACGTGAAATGATAAATGAAATGCTCAGTGTCAAAGAAATTCGTCGCGATTCTAAGCTGTGCCCTTCTTGTCAAATGGCTATTTCCCGAACTGAAGGTTGCAACAAAATGGTGTGTGGTAATTGTGGCGAATATTTCTGTTACCGCTGCAACAAAGCACTTGATGAATCTGATCCTTACGGACATTTCAGGGATGGGTCCTGTGACTTGTTCCCACAAGAAATGGTGGAGGCTTGGCAAGAACGCATAAACCACCGTCAGGTGGTGGCACAGATACAAGCAGAACTCCTTAATGAACGAGGCCAACATTGTCCTAATTGCCGTCAATTTAATGCGAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAAGGCCATTTTTGCTACTCTTGCAAGCAGATTGTTAGGCGCAGCGCCCAGCATTATGGACCCAAGGGTTGCAGACAGCACTCCGATGATTAG 1875 0.4315 MAAEAPFKNHKPRGHGSQPRRRNQGGKLKILFVPKSELDSSNSELDRSLDELSIREDFDVARELDPENKNGSELKNEVENKGEESHADDSDKEGNSVYSRLDKQMRDVGEPELSEEQLSVNDQLQEDELLALEAIYGENVLKLERWNGLRCFQIHIHLEVLDAIGIKAKLNSSNEHKTASSNADDFSYSFKVKYLPPIILTCLLPKSYPSHQPPHFIIYVKWLDSTRISSLCSMLDSLWTEQQGQEVIYQWVEWLHGFSLSHLGFDKEITLGPHGMKHVGDERAVSGAVSLDFDVPSLRSYNNERHHENFLKEMHECGICFNVYAGTEFAQLPCQHFFCLKCLQTFAQMHVKEGTLSNLQCPGSKCAVMIPPALLKCLLDDKEYERWESLMLEKTLESMSDVAYCPRCETPCIEDEEHHAQCSKCFFSFCTLCRERRHVGMECMALEMKLQILQERQNSSQLKGAQRLKEREMINEMLSVKEIRRDSKLCPSCQMAISRTEGCNKMVCGNCGEYFCYRCNKALDESDPYGHFRDGSCDLFPQEMVEAWQERINHRQVVAQIQAELLNERGQHCPNCRQFNAKVGNNNHMFCWACQGHFCYSCKQIVRRSAQHYGPKGCRQHSDD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01065 624 MobiDBLite consensus disorder prediction 40 95 - -
Accr10g01065 624 Pfam IBR domain, a half RING-finger domain 385 443 IPR002867 GO:0008270
Accr10g01065 624 Pfam IBR domain, a half RING-finger domain 480 523 IPR002867 GO:0008270
Accr10g01065 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 400 IPR013083 -
Accr10g01065 624 SUPERFAMILY RING/U-box 312 399 - -
Accr10g01065 624 SUPERFAMILY UBC-like 119 258 IPR016135 -
Accr10g01065 624 Gene3D - 461 561 - -
Accr10g01065 624 SUPERFAMILY RING/U-box 476 532 - -
Accr10g01065 624 Pfam RWD domain 123 256 IPR006575 GO:0005515
Accr10g01065 624 CDD RING-HC_ITT1-like 311 370 - -
Accr10g01065 624 ProSiteProfiles TRIAD supradomain profile. 313 542 IPR044066 -
Accr10g01065 624 FunFam RBR-type E3 ubiquitin transferase 458 567 - -
Accr10g01065 624 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Accr10g01065 624 ProSiteProfiles RWD domain profile. 127 262 IPR006575 GO:0005515
Accr10g01065 624 FunFam RBR-type E3 ubiquitin transferase 312 396 - -
Accr10g01065 624 SMART ibrneu5 385 443 IPR002867 GO:0008270
Accr10g01065 624 SMART ibrneu5 472 537 IPR002867 GO:0008270
Accr10g01065 624 CDD Rcat_RBR 571 604 - -
Accr10g01065 624 CDD BRcat_RBR_RNF14 396 444 - -
Accr10g01065 624 SUPERFAMILY RING/U-box 385 447 - -
Accr10g01065 624 SMART RWD2001b 127 262 IPR006575 GO:0005515
Accr10g01065 624 Gene3D Ubiquitin Conjugating Enzyme 113 264 IPR016135 -
Accr10g01065 624 MobiDBLite consensus disorder prediction 1 95 - -
Accr10g01065 624 SMART ring_2 317 364 IPR001841 -
Accr10g01065 624 SMART ring_2 573 602 IPR001841 -
Accr10g01065 624 SMART ring_2 490 519 IPR001841 -
Accr10g01065 624 CDD Rcat_RBR_RNF14 475 540 IPR047548 GO:0008270
Accr10g01065 624 ProSiteProfiles Zinc finger RING-type profile. 317 362 IPR001841 -
Accr10g01065 624 SUPERFAMILY RING/U-box 562 620 - -
Accr10g01065 624 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 534 609 IPR031127 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01065 316 547 C3H Transcription Factor Family AT2G31770 25.417 7.03e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01065 K11971 - gmx:100500662 848.58