Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01061 ATGGAGGAAAAGAAGTTCGTTTGCAAGTATTGCAACAAGAAGTACCCATGTGGGAAGTCTCTTGGTGGGCACATCAAGACTCATATGACTGCTAAACATTATTCATCGCTTCAATCTAAGGAAGGTAGAACCAATAATGCCGATGATAGTGTCGTGAAGTTCGATGGTGGAAGAAGGAAGAGGAAGAGAGATTTTGGGTCGGAAGAAGAAGAAGAAGATGAAGCTGGAAACCCCATTTATGGTCTTCGAGAGAATCCCAAGAAAACAACGAGGTTCGTACATTCCAAAGTTGTTAATGTTGTTGCTGGTACACAACAACAACAACAACAACAACAAGAGAGGTTCTGCAAAGAATGTGGGAAAGGCTTTTTGTCTCTGAAAGCTCTCTGTGGCCACATGGCTTGTCATTCGGAGAAAGATAAAGGGATGATGAACAATTCTGGGTTTAGCATGAAGCAGAAATTGGTGGTGGGTAGCCAATCGGACACTGAAACATCATCTTCTCCGAATCATCCTAGGAGATGCCGAAGAACGAGGTTCAAGACCGTGAAGACTGATAAAAACGATCATCACCCTTCTTTTGTTTCTTTGGCGAATGGTTCTTCCTCTGCATCTGAGGTTGAGCAGGAACAAGAAGAGGTCGCTAGGTGTTTGATGTTATTATCCAAAGACACTAGCCATAAGGGTCGTTTTGTTTTGCCCACTGAATCTTCCGACAACAATTCTGTTGTGGTAGAGGCAAAATCACCGCCTATGAACACGATTATTACTCTAAAAAATGGTAAGCAAAGCTGTGTCTCTAATGGTTTTGAGATGGTGAAGGACAAGAAGAAGAAGAAGGTGGTTCAGTATAATAATGGCATTAAGTTGAAGAAGTCTGCTGAGATTGTCGATTCTGATGATTCAGATTCTGGGTATTTCAGAAATGGTCCCAAAAAGTTGGAATTTTCAATTGATGGGTATCCTAGGAATAGGGAATTCAAGACACCAAAAGTGGAACTCAGGTCTGGGTGTGAGTTTGATCAGAGCTATGATGCTGAATCGAGGAAGAAGATGCTAATCAAGAACAGAGGAAGAACCAGAAGCACTGAACCCAGAAAGCTTATTTTGGAGGATTTGGACTACAATACAATAACAGATGGATCGACAAGGGAAGAATTAATCAATTGGAGAAAGAGGCCAAGATATGAGGATTCTCTTTGCCAAAACAATTCAGTTGGTGTTTCTTGTAAAAGGACACCAAATGGTTTTCACAGAGAGCTGCCATTGAAGCCCCCAGAGAGCTTGAAGAGTGAACAAGTTATTATCAATGGCTCTCAGGATTTAGCAGATGAGAGTGATGAAAGCAGCACAGACACTGATGTTTATACTGCTCCGAGAACTCATAGCAGCTGCAAGGTCATCAATGGAAAGAAGGAAGGCAAGTTCAAGAAGAAATTGAAGTCAAAGAAAAGTAGGGACCATGAATGCCCAATCTGCTACAAAAATTTTAAATCAGGCCAAGCACTAGGAGGTCACAAAAGGTCTCATTCTATTGGAGGTTCTGAAGAAGACAACACCGAAGTGGTGATCAAACAAGACAACCCTCCTATTGTTCCATGCTTGATTGATCTCAATCTACCTGCTCCAAGTGATGATTAG 1641 0.4168 MEEKKFVCKYCNKKYPCGKSLGGHIKTHMTAKHYSSLQSKEGRTNNADDSVVKFDGGRRKRKRDFGSEEEEEDEAGNPIYGLRENPKKTTRFVHSKVVNVVAGTQQQQQQQQERFCKECGKGFLSLKALCGHMACHSEKDKGMMNNSGFSMKQKLVVGSQSDTETSSSPNHPRRCRRTRFKTVKTDKNDHHPSFVSLANGSSSASEVEQEQEEVARCLMLLSKDTSHKGRFVLPTESSDNNSVVVEAKSPPMNTIITLKNGKQSCVSNGFEMVKDKKKKKVVQYNNGIKLKKSAEIVDSDDSDSGYFRNGPKKLEFSIDGYPRNREFKTPKVELRSGCEFDQSYDAESRKKMLIKNRGRTRSTEPRKLILEDLDYNTITDGSTREELINWRKRPRYEDSLCQNNSVGVSCKRTPNGFHRELPLKPPESLKSEQVIINGSQDLADESDESSTDTDVYTAPRTHSSCKVINGKKEGKFKKKLKSKKSRDHECPICYKNFKSGQALGGHKRSHSIGGSEEDNTEVVIKQDNPPIVPCLIDLNLPAPSDD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01061 546 SMART c2h2final6 488 510 IPR013087 -
Accr10g01061 546 SMART c2h2final6 114 136 IPR013087 -
Accr10g01061 546 SMART c2h2final6 6 28 IPR013087 -
Accr10g01061 546 ProSitePatterns Zinc finger C2H2 type domain signature. 490 510 IPR013087 -
Accr10g01061 546 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 545 - -
Accr10g01061 546 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Accr10g01061 546 MobiDBLite consensus disorder prediction 46 68 - -
Accr10g01061 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 488 511 IPR013087 -
Accr10g01061 546 SUPERFAMILY beta-beta-alpha zinc fingers 2 35 IPR036236 -
Accr10g01061 546 SUPERFAMILY beta-beta-alpha zinc fingers 115 510 IPR036236 -
Accr10g01061 546 MobiDBLite consensus disorder prediction 158 178 - -
Accr10g01061 546 MobiDBLite consensus disorder prediction 35 86 - -
Accr10g01061 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Accr10g01061 546 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Accr10g01061 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Accr10g01061 546 Pfam C2H2-type zinc finger 6 29 - -
Accr10g01061 546 Pfam C2H2-type zinc finger 116 138 - -
Accr10g01061 546 Pfam C2H2-type zinc finger 488 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01061 Accr-Chr10 32128024 32129664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01061 1 546 C2H2 Transcription Factor Family AT1G26610 37.610 2.01e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g01061 zf-C2H2_6 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01061 - - pcin:129310630 698.738