Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01021 ATGACTCAAACCCAAGAGGAAAGTTTTTTGGAATTTGAGGCAAATGTTTCAATGCCCAGCTTGAGGCAATCCTTCTGCATCTCTTCCTCCTCTTCCTCTCCTTTGTTTTGCACCGTTCTCTTTCATTCCATTTTTCTCTATGGTTTAGCATTCTCTGCAAATCATGAAGCATCTGTTCTCTTCTCTTGGCTTCACAGCTCTGCTTCACCACCACTTCCATCTTTCTCCAACTGGAACATCCTTGACGCCGACCCATGTAACTGGACCTTCTTAACATGTTCCCCACAAGGTTTTGTCACTGAAATCAATATACAATCCATCCCTCTACAGCTTCATTTTCCTTCCAATCTCTCTTCCTTTCTCCATCTTCAAAAGCTTGTCATTTCTGATGCCAATCTTACTGGAAGCATCCCTGTCAACATTGGTGACTGCTCTGCCCTCACTCTTATTGACCTTAACTCCAACAATCTTGTTGGGTGTATCCCTTCAAGTATAGGTAAGCTTCAAAACTTGGAGAGTTTGTCTCTGAACACAAACCAGCTTACTGGGAAAATCCCACTTGAGATAGGAAACTGCATTAGCCTTAAAATTCTCGTCCTTTTTGATAACCAGTTAAGTGGTTTTATCCCACCTGAGATAGGAAAGTTGTCAGAACTTGAGATTCTCAGAGCAGGAGGAAACAAAGACTTAGTTGGGAAAATCCCAGAAGAGATTGGAGAATGCAGAAATTTGACTATGCTGGGGCTAGCTTATACTGGTTTATCAGGTTTATTGCCAGCTTCATTGGGAAAACTGAGCAAGCTTCAAACTTTGTGCATCTACACTACAGTGCTATCTGGTGAGATTCCAGCTGAGTTAGGTAATTGCTCTGAACTTGTTGATTTATTCTTGTATGAGAATAGTCTATTTGGGTCTGTTCCACCTGAGCTGGGTAAGCTTCAAAAGCTGGAGCAATTGTTTTTATGGCAGAATAGTCTAGTGGGAGCTATCCCAGAAGAGATTGGAAACTGTACAAGCTTGAAAATAATTGATCTTTCCTTGAATTCTCTATCTGGCACTATCCCTTTATCTTTTGGGGCTCTGTTAGAACTTGAGCGGTTTGAGATAAGTGATAATAATTTGTCTGGGTCAATACCTCCAAGTCTTTCAAATGCCTTATTTCTGCAACAGCTTCAAGTTAACAAAAATCATCTCTCAGGTTTGATTCCCCCAGAGCTTGGGAGGTTATCAAAGCTCACAGTTTTCTTTGCTTGGCAAAACCAACTTGAAGGAAGTATTCCTTCTAGTCTTGCAAATTGTAGTAACCTGCAAGAACTAGATTTGTCTTGCAATAAACTTACCGGTAGCATTCCTCTTGGGCTACTTCAACTTCAAAACCTTTCAAAATTGCTCTTGATTTCTAATGATATTTCTGGTTCAATCCCATTGGAAATAGGCCTTTGTAGTTCTCTTACAAGACTGAGACTTGGGAAGAATAGGATTACTGGTGTGGTCCCTAAGTCAATAGGGAACCTAAAAAATCTGAAATTTTTAGACCTCAATGAAAATCACCTTTCTGGGCAGGTCCCAGATGAGATTGGAAACTGCACAGAACTGCAAATGATAGATTTCAGCAGCAACATTTTAGACGGTCCATTGCCTAATTCCTTGTCATCGCTATCTTTGCTCCAAGTATTTGATGGATCTTCAAACAGATTTTTAGGTCACATACCAGAAAGTTTCAGCCGTCTTGTTTCACTAAATAAACTAATCCTGGGCGGAAACTTGTTTTCCGGACTGATTCCTACATCATTGAGCCAATGTTCAAGTCTCCAAATGCTTGATCTTGGTGACAATGAGCTCATAGGAAGCATTCCAGCAGAGCTGGGTCATATAGAGAATCTTGAAATTGCTCTTAACCTTAGTTTCAATTCTCTAAGTGGCCCAATTCCAGATCAAATCTCTTCTCTTACCATGCTTTCTGTACTAGACCTTTCTCATAACCAGTTAGAGGGAGGTTTAAACTCACTTGCAGGCCTAGATAGTCTTGTCTCTCTCAATATTTCCTACAACAATTTCACAGGTTATCTACCAGATAATAAGCTTTTCAGGCAATTATCTCCAAAGGACGTAACTGGGAATCAAGGCCTTTGCTCATCTGGTCAAGACTCATGCTTTATGAGTGCTTCAAGCATGACACTGAATGGAAGTGAAGCGAGGAAGTCGCGAAGGATTAAGCTAACTCTTGGTTTATTAGTAGTCTTAACAGTACTACTAACAGTAATGGGGATAATTGCAGTGATAAAGGGAAGAAGAACCATTAGAGATGATGATTCAGAACTAGGGGACTCATGGCCGTGGCAATGCATTCCATTCCAAAAGCTAAACTTTTCAGTGGATCAAGTGTTGAGACGTTTAGTTGAAGGGAATATAATTGGAAAAGGATGTTCTGGTGTTGTTTATCGTGCTGAAATGGATGACGGTGAAGTCATAGCTGTGAAGAAACTGTGGCCTACAACAATGGATGTAGGAGAAGGATTCAAGGATGATAAAAGTGGAATTCGCGACTCATTCTCAACTGAGGTGAAAACACTTGGCTCGATCCGTCATAAGAACATTGTTAAATTCTTGGGATGTTGTTGGAATAAAAACACAAGATTGCTGATATATGATTATATGGCAAATGGAAGTCTAAGTAGTCTTCTTCATGAGAGGATAGGGAATTCTCTGGAATGGGAACTCAGGTACAGAATTCTGTTGGGAGCTGCAGAAGGCCTTGCTTATTTGCACCATGATTGTGTGCCTCCCATAGTACATAGAGACATCAAAGCCAATAACATCCTCATTGGCATTGAGTTTGAGCCTTATATTGCAGACTTTGGCTTGGCTAAGCTAGTTGATGATGGTGCCATTGGTCGTTCCTCCAATACTGTCGCTGGGTCTTATGGATACATTGCTCCAGAATATGGATACATGATGAAGATCACGGAGAAGAGCGATGTTTACAGCTATGGTGTAGTGATGTTGGAAGTCTTGACAGGCAAGCAACCGCTAGATCCGACGATACCAGAGGGCCAACATGTGGTTGATTGGGTGAGACAAAAAAGAGGGGTTGAAGTGCTTGACTTGAGCTTACAGTCAAGACCAGAATCAAAAATAGAGGAAATGATGCAGGCACTAGGCATAGCCTTTTTGTGTGTAAACTCATCCCCAAGAAAGAGGCCAACAATGAAAGATGTTGCAACAATGCTAACAGAGATCAAACAAGAAACATGA 3255 0.4095 MTQTQEESFLEFEANVSMPSLRQSFCISSSSSSPLFCTVLFHSIFLYGLAFSANHEASVLFSWLHSSASPPLPSFSNWNILDADPCNWTFLTCSPQGFVTEINIQSIPLQLHFPSNLSSFLHLQKLVISDANLTGSIPVNIGDCSALTLIDLNSNNLVGCIPSSIGKLQNLESLSLNTNQLTGKIPLEIGNCISLKILVLFDNQLSGFIPPEIGKLSELEILRAGGNKDLVGKIPEEIGECRNLTMLGLAYTGLSGLLPASLGKLSKLQTLCIYTTVLSGEIPAELGNCSELVDLFLYENSLFGSVPPELGKLQKLEQLFLWQNSLVGAIPEEIGNCTSLKIIDLSLNSLSGTIPLSFGALLELERFEISDNNLSGSIPPSLSNALFLQQLQVNKNHLSGLIPPELGRLSKLTVFFAWQNQLEGSIPSSLANCSNLQELDLSCNKLTGSIPLGLLQLQNLSKLLLISNDISGSIPLEIGLCSSLTRLRLGKNRITGVVPKSIGNLKNLKFLDLNENHLSGQVPDEIGNCTELQMIDFSSNILDGPLPNSLSSLSLLQVFDGSSNRFLGHIPESFSRLVSLNKLILGGNLFSGLIPTSLSQCSSLQMLDLGDNELIGSIPAELGHIENLEIALNLSFNSLSGPIPDQISSLTMLSVLDLSHNQLEGGLNSLAGLDSLVSLNISYNNFTGYLPDNKLFRQLSPKDVTGNQGLCSSGQDSCFMSASSMTLNGSEARKSRRIKLTLGLLVVLTVLLTVMGIIAVIKGRRTIRDDDSELGDSWPWQCIPFQKLNFSVDQVLRRLVEGNIIGKGCSGVVYRAEMDDGEVIAVKKLWPTTMDVGEGFKDDKSGIRDSFSTEVKTLGSIRHKNIVKFLGCCWNKNTRLLIYDYMANGSLSSLLHERIGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGIEFEPYIADFGLAKLVDDGAIGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVMLEVLTGKQPLDPTIPEGQHVVDWVRQKRGVEVLDLSLQSRPESKIEEMMQALGIAFLCVNSSPRKRPTMKDVATMLTEIKQET 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01021 1084 Gene3D Ribonuclease Inhibitor 386 457 IPR032675 -
Accr10g01021 1084 SUPERFAMILY Protein kinase-like (PK-like) 779 1077 IPR011009 -
Accr10g01021 1084 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 228 451 - -
Accr10g01021 1084 Pfam Protein kinase domain 801 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g01021 1084 Gene3D Ribonuclease Inhibitor 458 721 IPR032675 -
Accr10g01021 1084 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 454 722 - -
Accr10g01021 1084 Gene3D Transferase(Phosphotransferase) domain 1 886 1084 - -
Accr10g01021 1084 Gene3D Ribonuclease Inhibitor 211 384 IPR032675 -
Accr10g01021 1084 PANTHER RECEPTOR-LIKE PROTEIN 55 459 1081 - -
Accr10g01021 1084 Gene3D Phosphorylase Kinase; domain 1 784 885 - -
Accr10g01021 1084 SMART LRR_typ_2 481 504 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 650 672 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 505 529 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 673 698 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 433 457 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 361 385 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 313 337 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 577 600 IPR003591 -
Accr10g01021 1084 SMART LRR_typ_2 168 192 IPR003591 -
Accr10g01021 1084 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 782 885 - -
Accr10g01021 1084 FunFam Nuclear pore complex protein NUP107 53 210 - -
Accr10g01021 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Accr10g01021 1084 SUPERFAMILY L domain-like 62 422 - -
Accr10g01021 1084 ProSiteProfiles Protein kinase domain profile. 799 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g01021 1084 ProSiteProfiles Leucine-rich repeat profile. 435 456 IPR001611 GO:0005515
Accr10g01021 1084 PRINTS Leucine-rich repeat signature 650 663 - -
Accr10g01021 1084 PRINTS Leucine-rich repeat signature 436 449 - -
Accr10g01021 1084 Gene3D Ribonuclease Inhibitor 52 210 IPR032675 -
Accr10g01021 1084 SMART LRR_sd22_2 481 507 - -
Accr10g01021 1084 SMART LRR_sd22_2 650 675 - -
Accr10g01021 1084 SMART LRR_sd22_2 601 630 - -
Accr10g01021 1084 SMART LRR_sd22_2 433 462 - -
Accr10g01021 1084 SMART LRR_sd22_2 529 555 - -
Accr10g01021 1084 SMART LRR_sd22_2 168 189 - -
Accr10g01021 1084 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Accr10g01021 1084 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 886 1084 - -
Accr10g01021 1084 Pfam Leucine rich repeat 483 540 IPR001611 GO:0005515
Accr10g01021 1084 Pfam Leucine rich repeat 562 614 IPR001611 GO:0005515
Accr10g01021 1084 Pfam Leucine rich repeat N-terminal domain 53 94 IPR013210 -
Accr10g01021 1084 SUPERFAMILY RNI-like 368 692 - -
Accr10g01021 1084 SMART serkin_6 799 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01021 Accr-Chr10 31315177 31319208 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01021 51 1082 Receptor kinase-like Gene Family AT5G56040 49.093 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr10g01021 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01021 - - gmx:100818541 1571.21