Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01011 ATGGAATCTTGGAGTTACGCCTCAGAAGAGAGAAGCTATTTGTTTTCAGATGAAATGGATTTCTCACTGGATGCGTATATGAGAAGTAGAAGAGCAATGGTTGAATGGGACAATAATAATAATACTAAAGCCTCTTATATCTTTGAGAAAGATGGGTTTATTTCAGATAAAGAGGTAATTAAAAGCGTGGAGTTTGTGGACTTGGGGTTTCCAGATTTGTTCAGAAGGCCCGTTCATGGTGGTGGCCAGCCACTTGAAGCATCAAACTATGAACATGACAGTGATTCTAGTAAGATAGTTAATTCTTCTACTCATGTTATTGCTCTTAATTCACCTTTGGGAGAAGTAGAATCTGAGACTAGGCACCCATGTTCTGTAGTTGAATCTAAGATTCATGATTCTTCACTGATTGATTTAAAGCTAGGGAGATTAGGAGATTGTAACGATTCAAGTAGTGATAAGAATGACAATGAGGGGTTCACTTTTCAACCTATGCATCTGTCGTCGCTTACGAAGAGAGCTCGCACTTCCAGCTTACCAACTCAAACACCTGTTTGTCAAGTTTATGGTTGTAACAAGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCACAAAGTTTGTGATGTTCATTCCAAGACCGCCAAAGTTATTGTTCATGGCATTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGCAGACGCCTAGCTGGACACAATGAACGTCGAAGGAAGCCTCAGTTTGATTATATCTCTGGTAAACCACAGAAGATACTGCAGTCATGTCAAGGTACCAAATATTTTGGGGCTTCAATACAGAAGAGTCCCCAGTTTGCCTTTCACGACATGTTTGAAAGTGGCATTTTTTACTCGGGAAAGTATGAACAAAGCAGTCAGATTGGACACATCAAGTTCGAAGATGAATCAACTTATAGTTCTCAATTTGCAGTACCCACCATAACAAATGGTCAAGAGTTATCCAGGGCCTCCAACTCCAGAAGTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACACGATCTATCACGCAACTCAGCTGGTTCCCTTATTTCTCAAGGCATCTGCACGCAGCACAGTGATGGCCAAGTTCCTGAAACACCTTATGGGATAAGATCTCTGGATAAATATGTCTCAAGTCAGTCCTTTTCTTGTGAGATAAACGCCATGGTAGTTACCAAGAACAGACCCATAATGCCTTCTGATGTTGGTCATCATGCTCTTCAACTTGAAGGCCATGAAGATGGTGATACTAACAAACCATCAAGTGAACATAGCTCCACCGTTGATCTGTTCCAATTGTCGTCGCATCTTCAAAGGGTGGAGCAGCAGAGAAATTCTCTTCAAGTGAAGCATGAAAACGAGGACGGCTGCTTTTTTCCAACCATGTGA 1449 0.4189 MESWSYASEERSYLFSDEMDFSLDAYMRSRRAMVEWDNNNNTKASYIFEKDGFISDKEVIKSVEFVDLGFPDLFRRPVHGGGQPLEASNYEHDSDSSKIVNSSTHVIALNSPLGEVESETRHPCSVVESKIHDSSLIDLKLGRLGDCNDSSSDKNDNEGFTFQPMHLSSLTKRARTSSLPTQTPVCQVYGCNKDLSSSKEYHKRHKVCDVHSKTAKVIVHGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYISGKPQKILQSCQGTKYFGASIQKSPQFAFHDMFESGIFYSGKYEQSSQIGHIKFEDESTYSSQFAVPTITNGQELSRASNSRSCALSLLSAQSHDLSRNSAGSLISQGICTQHSDGQVPETPYGIRSLDKYVSSQSFSCEINAMVVTKNRPIMPSDVGHHALQLEGHEDGDTNKPSSEHSSTVDLFQLSSHLQRVEQQRNSLQVKHENEDGCFFPTM 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01011 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 142 465 IPR044817 GO:0003677
Accr10g01011 482 Gene3D - 177 247 IPR036893 GO:0003677|GO:0005634
Accr10g01011 482 SUPERFAMILY SBT domain 184 265 IPR036893 GO:0003677|GO:0005634
Accr10g01011 482 FunFam Squamosa promoter-binding-like protein 14 177 247 - -
Accr10g01011 482 ProSiteProfiles Zinc finger SBP-type profile. 183 260 IPR004333 GO:0003677
Accr10g01011 482 Pfam SBP domain 186 259 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01011 Accr-Chr10 30817541 30820412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01011 137 480 SBP-box Gene Family AT1G69170 39.045 3.42e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr10g01011 SBP 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01011 - - gmx:100797372 566.614