Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01009 ATGGGAAGAGGTAGGGTTCAGCTTAAGAGGATAGAGAACAAGATCAATCGGCAAGTGACTTTCTCCAAAAGGAGAAATGGATTATTCAAGAAAGCTCATGAGATCTCTGTCCTCTGTGACGCTGAAGTTGCTCTTATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACAGATTCTTGCATGGAGAAGATTCTGGAACGCCACGAAAGCTATGCTTATGCAGAGAGACAGCTAGCTGGAGGACATGATCATGAGTCGCAGGAAAACTGGACGATTGAATATTCAAGACTGAAAGCTAAGATAGAGCTGTTGCAGAGGAACCATAGGCACTATATGGGAGAAGATCTGGGTTCCATGAGCCTCAAGGAGCTCCACAGTCTGGAGCAGCAGCTTGATACTTCCATCAAACTAATTCGCACCCGCAAAAACCAGCTTATGTATGAGTCCATTGCCGAGCTTCAGAAAAAGGAGAAAGTGATACAGGAAGAGAATAGCATGCTGGAAAAGAAGATAAAGGCGGCGGCGGCGGCACGGCACAGCCACATGACATGGGAGCAGCAAAACCTGGGAGGACCTAATTCAGCTTACCTCCTCCCACCTACTCTTCATCATCATCCCACTCTCCACATCGGAGGGAATTACAGAGAGCAAGGAGCAGAAAGGAACGAGCTTGACCTAACCCTGGAACCACTCTACTCCTGCAACCTGGGATGTTTTTAA 726 0.4725 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHESYAYAERQLAGGHDHESQENWTIEYSRLKAKIELLQRNHRHYMGEDLGSMSLKELHSLEQQLDTSIKLIRTRKNQLMYESIAELQKKEKVIQEENSMLEKKIKAAAAARHSHMTWEQQNLGGPNSAYLLPPTLHHHPTLHIGGNYREQGAERNELDLTLEPLYSCNLGCF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01009 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr10g01009 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Accr10g01009 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Accr10g01009 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 Coils Coil 152 172 - -
Accr10g01009 241 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Accr10g01009 241 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Accr10g01009 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 FunFam Floral homeotic protein APETALA 1 13 68 - -
Accr10g01009 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 Coils Coil 89 116 - -
Accr10g01009 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr10g01009 241 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01009 Accr-Chr10 30781997 30786392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01009 1 241 MADS-box Gene Family AT1G26310 60.630 5.90e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr10g01009 K-box 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01009 K09264 - gmx:100810129 353.214